UFO06874.5prime Sequence
1129 bp (1015 high quality bases) assembled on 2009-08-31
> UFO06874.5prime
CAGTCGACATGTCCAAGGGATCGGTGTTGCCACAATATATTGCTGGCTTG
TCGGCCAGCTTTGGTGCCCTCTGCATGGGCGCCTCCATTGGTTGGTCCTC
GCCCGTGGAGAATATGATAACGGTGAACACGGAATACGGCTTTCCCATTA
GCTCCAGTCAGTTCGGCTGGGTATCCTCGCTGCTGACCCTGGGCGCCACT
GTGATCTGCATTCCCATTGGTTTCGCCATCGATTGGATCGGCAGGAGACC
CACTATGTTAGCCCTAATTCCACCGTACATGGTGGGCTGGGTGCTGATGC
TGTTCGCCAAAAACGTGACCATGCTCTACTTCGGACGATTCATTCTTGGC
ATGTGCGGCGGAGCCTTTTGCGTAACAGCTCCCATGTACTGTACAGAGAT
TACGGCGACAGCACTACGAGGCACCATCGGATCCTTTTTCCAGCTGCTGA
TTGTGTCGGGCGTGCTGTACGGCTATTTGGTGGGCGCCTTCCTGCCCCTG
CTCACCATCAATATCCTGTGCGCTATTCTGCCCGTAATCTTTGCTATCAT
ACACTTCTTCATGCCGGAGTCACCCGTCTACCTGGCCATGAAGGGACGCA
ACGATGATGCCGCCAAGGCCTTGCAGTGGCTGCGCGGCAAGGATGCCGAT
ATCGATGACGAGCTCAAGGAGATCCTGGAGGAGTCCCAGAAGCAGATTGA
TATGCCACAGGTCAACATTCTGTCCTCCCTTCGTCGACCCATCGTCCTGA
AGGGTCTTGGAATCGCTGTGCTCCTGCAGGTCTTCCAGCAGTGGACGGGA
ATCAACGCCGTTCTCTTCTACTCCGCCTCCATTTTCGAGGATACGGGCTC
TGACATAAGTGGCAGCGATGCCACGCTTATCATTGGAGTCACCCAAGTGA
CCAGCACGCTGGTTGCCGTGTCATTATCGACAAGGCTGTCGTCGCATCCT
GCTCTTATCTCTGGCGTTCTGATGGCCGTGTCCACTGCACTGATGGGCGT
GTACTTTCAGCTAAAGGAGAACGATCGGCTCATGGACATTTCGGTGGGGT
GGCGATCAGCAGATCTGCATTTCTTATTCTCCTTCTCGAATGGAATCCGG
ACGGGCTGGCCTGGGTATGGCGGAACTTT
UFO06874.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:49:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6484-RA | 1590 | CG6484-RA | 65..1199 | 4..1127 | 5130 | 97.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:49:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 17583240..17583948 | 712..4 | 3530 | 99.9 | Minus |
| 2R | 25286936 | 2R | 17582507..17582828 | 1026..708 | 1430 | 98.4 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:49:15 has no hits.
UFO06874.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:21:53 Download gff for
UFO06874.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6484-RA | 59..1113 | 1..1048 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:51:53 Download gff for
UFO06874.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6484-RA | 62..1116 | 1..1048 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:30:18 Download gff for
UFO06874.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6484-RA | 62..1116 | 1..1048 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:30:18 Download gff for
UFO06874.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 17582507..17582825 | 711..1026 | 98 | <- | Minus |
| 2R | 17583242..17583949 | 1..710 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:51:53 Download gff for
UFO06874.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 13470012..13470330 | 711..1026 | 98 | <- | Minus |
| arm_2R | 13470747..13471454 | 1..710 | 99 | | Minus |
