UFO06875.5prime Sequence
1113 bp (1007 high quality bases) assembled on 2009-08-31
> UFO06875.5prime
CAGTCGACATGCGCTTTCTTGTTCTCTCAACACTGCTTCTGGCCTCTTTG
GCACTTGGCCAGGCTCAACAGCACGGTGGACTGGCCGTCGAAATTCAGAA
GCAGCGGCTGGTCAAATTTCCCGAGGACTTTGAGCCCAATGCGGCCACTC
CGTCCTCGGAAAAGGCGGACGAGGCCAAGCGCATCCTCGAGCAGATAGCC
AAGGTTAACGAGGCCTTTGGCTACGTGAAGAAGCAGCCGGAGCAGCCCAA
GCTGCCACCGATCCTTGATTCCAGTCAATACCTGTTCCCCAAGCCCGCCC
ATCAGCCATTTCACGCCCATCAGCACCACTTCTCGGGAAGTAATGGTCAG
ACCTTGTTAGAACCCTCAATTAGGGCGGTGAAACTCACAAGAAATGTGGC
GGGCAGTTACAATGTGCCTCCCAGGTTGCGCCAGGCAATTGAGAGCACCT
CCAAGGAGGAGAAGAAAGCGCAACTCTACTTCCGACCCAAACAGGTGGAG
GTACCGAAGCCGAGTTCCGAACAAGAAGCACAGCAGCTGCCCGCCCACTT
TGTGGTGCCCGTGCACCTGTACAAACTCAATAAGGAGGAGTATCTCAAGG
AGCACGCCTCGCAGGAATACAAGATAAAGGGATACAAAATCATTGGCGAT
GTGGACAGCTTCTATGGCAAGGCGAAGGCTGGAAGAAAACAGGGCAAGAC
GACGCCCAAGTATCACCTGTTCTTCCTGCCCCGAGAACTGGCTCTCAATG
AAGATGGCACCCCAAAAAGGGGTAATTCCACCACCATTGGTACGACCACC
ACAAAGGCTCCAGTGCCTGTGAACTTCAAGGAATATCGTTTGGACTCCGC
GAGAAGCCCGTGCATAAGCCACAGAAGATTCAGCCCACTTCGTCACCGGA
ATTAAATTCTTTGAACAGAAAGAAGTTGGTTCCACAGCGAACCCGTTCGC
TGAGTGAAAGATGCTGACAGCAATCTACAGGATCACATCCCTATATCAGC
TACATCTGCGCTGTCTGTGAGTCTACTTACCACATCTGTGCTGCTGCCAT
CGATCGCTAGTCCATCGCATTGCGATTGAATAAGCTGAATGCAATCGAAC
TGCACTGCATCAG
UFO06875.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:54:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11905-RD | 2251 | CG11905-RD | 329..1379 | 9..1038 | 4750 | 98 | Plus |
| CG11905-RG | 2069 | CG11905-RG | 147..1197 | 9..1038 | 4750 | 98 | Plus |
| CG11905-RA | 2192 | CG11905-RA | 270..1320 | 9..1038 | 4750 | 98 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:54:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 16932149..16933011 | 951..92 | 4165 | 99.7 | Minus |
| 3L | 28110227 | 3L | 16933293..16933360 | 91..24 | 340 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:54:13 has no hits.
UFO06875.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:21:52 Download gff for
UFO06875.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11905-RD | 299..1350 | 1..1033 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:54:49 Download gff for
UFO06875.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11905-RA | 263..1314 | 1..1033 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:32:28 Download gff for
UFO06875.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11905-RA | 263..1314 | 1..1033 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:32:28 Download gff for
UFO06875.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 16932050..16933011 | 92..1033 | 97 | <- | Minus |
| 3L | 16933293..16933360 | 24..91 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:54:49 Download gff for
UFO06875.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 16926393..16926460 | 24..91 | 100 | <- | Minus |
| arm_3L | 16925150..16926111 | 92..1033 | 97 | <- | Minus |
