UFO06876.5prime Sequence
1124 bp (1042 high quality bases) assembled on 2009-08-31
> UFO06876.5prime
CAGTCGACATGCCCATTGAGTGCCTTATATCATTTGATAATAATCCACAA
GGTGTCTACTATGCCGGACAGGAGCTATCCGGCGTTGTTGATCTCAGCGT
CGACGCCACGAAGCGCATTAAAGGCATCCACGTCACCGTCAGCGGCTATG
CCAAGATACGCTGGATAAAAAAGGGATATCCGCGCGACAGCGAGCGCGCC
ATGTGCCGTGCCTACCGATCGTATCTGTCCTCGCGGTCCTACGTCCTCGG
ATCCTGCGCGAACAACTCGAGCATCGACTGGCCGGCCGGCGAGTACTCGT
ACACCTTCCACGTGATTCTGCCCGACAATCTGCCTACGTCCTTCGACGGC
AAGTATGGCCAGATCCACTACGAGATCATAACAACGATCGAAAGGGCCGC
TCGCCACCCGAAGGTCTTTAAGCTGCCATTTACCGTAATACAACCGCTGG
ACCTGAACGCAGATGCAATTTACAGGGTTCCTCTGGAGATCCTCGATCGG
AAACGGTTCTGGAGCTTCTGCTGCCCCACAGGCCCGCTGACGGTGAAGTT
CTCGACGCCTTACTGCGGATATGCGCCCGGCCAGAAGATCCACTTCGTGC
TGTACATCAACAACGAGTCCTCGATCGACATAATCGAATGCGAGGTCAAG
CTGAAGCAGGAGGTGAGCTACGAGTCGCACGATCCGCAGCATGAGTACCG
CTACGACAAGCACCTGATTGCGCGGAAGCAGTTCGGAAACGTGCTGAGAT
GGTCGAGAAAGGTGTACCGTGGGTATCTCGACCTGCCGTCGATACCGCCC
ACTTCGGTGAAGCCCACGTGCCCCATTAGCGTTAACTATTCGATTAAGAT
CATCGTGAACCCCACGGAGTTTCACTGGAAACTTAAGCTGAAGATTCCGC
TGACCATCGGCAGTATACCGATCATGGATGGTCCGGAGGCCCTGTTGCGT
TTCATCGCAGCAGCACAGCACAAGTAGTAGTCAAATTTACAAATGTCGAC
GCAGCAGCGTCAAAGGATCGGGATCGTGATCGTGATATGAATGGTGGATC
GCGAAAGAAATCGAGATCGAGATCGGGACCGATAATTGCCTCAGTTCAGC
AGCGACGTATCAGCGATCACAACA
UFO06876.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:29:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2993-RC | 3339 | CG2993-RC | 862..1974 | 9..1114 | 5315 | 99 | Plus |
| CG2993-RB | 3276 | CG2993-RB | 862..1974 | 9..1114 | 5315 | 99 | Plus |
| CG2993-RA | 2961 | CG2993-RA | 862..1974 | 9..1114 | 5315 | 99 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:29:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 7807123..7807768 | 1114..476 | 2755 | 98.3 | Minus |
| 3R | 32079331 | 3R | 7807972..7808328 | 478..122 | 1785 | 100 | Minus |
| 3R | 32079331 | 3R | 7809038..7809153 | 124..9 | 580 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:29:37 has no hits.
UFO06876.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:21:51 Download gff for
UFO06876.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2993-RA | 830..1957 | 1..1123 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:43:58 Download gff for
UFO06876.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2993-RA | 856..1983 | 1..1123 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:03:21 Download gff for
UFO06876.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2993-RA | 856..1983 | 1..1123 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:03:21 Download gff for
UFO06876.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 7807111..7807767 | 477..1123 | 97 | <- | Minus |
| 3R | 7807974..7808326 | 124..476 | 100 | <- | Minus |
| 3R | 7809039..7809159 | 1..123 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:43:58 Download gff for
UFO06876.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 3632833..3633489 | 477..1123 | 97 | <- | Minus |
| arm_3R | 3633696..3634048 | 124..476 | 100 | <- | Minus |
| arm_3R | 3634761..3634881 | 1..123 | 96 | | Minus |
