UFO06877.5prime Sequence
1103 bp (1020 high quality bases) assembled on 2009-08-31
> UFO06877.5prime
CAGTCGACATGATTCGCAACGTAGTGGTGGGCGTGTCGGGCGGCGTGGAC
AGCGCCGTTTCCGCCCACCTGCTGGCGGAGCAAGGATTCAAGGTGCTGGG
TGTGTTTATGCGCAACTGGGATGAGGCGGACGAAGTGGGTCGCTGCAGTG
GGGAGGCGGATCTGAAGGACGCCGAGTGGGCGTGCCGGCAGCTCGGCGTG
GAGCTGCGTCAGGTGAACTATGTGCGCGAGTACTGGACGGCGGTGTTCAG
CCAGTTTCTGGACGATTACCAAATGGGCTTGACACCAAATCCGGACATCC
TGTGCAATCGCCACATTAAGTTTGACCTCTTTCACAAGCACGCCTTGGAA
AATCTCGGCTACGATGCCGTGGCCACGGGTCACTACGCCCGGAATAGTCT
GGGCAACTACCTGGAGGGGATTGCCTCCAACAACGACGCCCGCTTGCTAA
TACCCGCCGATACGTTCAAGGACCAGACATTCTTTTTGGCAGGTATTTCC
CGAAAGGCTCTGCAACGCACGATGTTCCCTTTGGGAGACTTCCAGAAGAG
CCAGGTCAAGGACTTGGCCAAGAAGATTGGCTTCCAGCGACTGGCCAAAA
AGAAGGAAAGCACTGGCATTTGTTTCGTTGGCAAACGCAACTTCAAGGAC
TTCATACAGGAGTACATCACTTCCAAACGTGGTCCCTTCCTAGACATCGA
CAGTGGAGCCGTTGTCGGCCACCACGAGGGCATCCATCAATGGACTGTGG
GCCAGCGGTGCCGTCTGAGCTCATTCCTTCAGCCCTATTTTGTGGCCAGG
AAAGAGGCCGCAAGCAATACCATCTATGTGGCATCTGGCCACAACCATCC
CGCCCTTCTCAGCACCCACATAGCCGTCGATCCGCCCAACTGGCTGTGTT
CCAAGTCCCACAGATTCTTTCGGACACTGGCAGCTTGAGGTGTCGCTTTC
GATTCAGCACACCAAACCATTGGTGGACTGTCAGCTGAGCATCTTCTCCA
GTAACACTTTTCTTGTCGAGTTGACGCTCCTTTAGAGCTATTAACCAGGA
ACAATATGGCGATCTATGACGAACCAGCTTGGTTTGGTTCGTCGGATCTA
GGC
UFO06877.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:53:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3021-RA | 1412 | CG3021-RA | 103..1191 | 9..1091 | 5130 | 98.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:53:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 1026893..1027546 | 9..662 | 3270 | 100 | Plus |
| X | 23542271 | X | 1027633..1028069 | 661..1091 | 1710 | 95.4 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:53:55 has no hits.
UFO06877.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:21:50 Download gff for
UFO06877.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3021-RA | 30..1125 | 1..1091 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:54:38 Download gff for
UFO06877.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3021-RA | 96..1191 | 1..1091 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:32:18 Download gff for
UFO06877.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3021-RA | 96..1191 | 1..1091 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:32:18 Download gff for
UFO06877.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 1026886..1027546 | 1..662 | 99 | -> | Plus |
| X | 1027635..1028069 | 663..1091 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:54:38 Download gff for
UFO06877.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 920919..921579 | 1..662 | 99 | -> | Plus |
| arm_X | 921668..922102 | 663..1091 | 96 | | Plus |
