UFO06878.5prime Sequence
1040 bp (896 high quality bases) assembled on 2009-08-31
> UFO06878.5prime
CAGTCGACATGGCCGACGTGGTCTTGGATCTGTACGCGGAGGACCTCGAC
AAGGACTTTGCCGGGCAGGCTCAGGACGAATTTGGAGGCGATGGAGTAGA
CCTATACGATGACATAGGCGGTCCCACCGAATCGGCCGCCTCAGGTGGCG
GGGGCGGTGGAACGCCCTCCGCAGATGGAGCCGCAGGGCCAGGCTCCGGG
GAACCCGGCGAACGGAATTCCGGTGGTCCCAATGGGGTGTACCATCAGAG
CAGTGGTAGCCTCACTCCGACCATGAATCGCCGCTACCAGCTTTATGTGG
GCAATCTCACATGGTGGACCACTGACCAGGATATCGCCAATTCGCTGCGA
GACATTGGCGTGAGTGATCTACAGGAAGTGAAGTTTTTTGAGAACAGGGC
CAACGGTCAGTCGAAGGGCTTCAGTGTAATCTCCCTCGGCTCAGAATCTA
GCCTGCGCGCCGTGCTCGACCAGCTGCCCAAGAAGGAGATGCACGGCCAA
GCGCCGGTGGTCACGTATCCCAGCAAGCAGGCACTCACCCAATTCGAGAG
TCTGCAAAAGACGCGTCCAGTGCCGCCGCCGCAGCAGAATGGACCGCCCA
GGGGTCCGGCACCACCCAGTATGGGTGGCGGGCCAATGCCCACCGGACAT
CCAGGAGGACCGCAAGGAGGTGGACCACCGGGACATCCACCGCGCGGGAT
GAACTCCATCATGCAGCCGGGCCAGTACCGACCGCAGCACATGTCGCAGG
TTCCCCAGGTGGGCGGACCCAACTCAAGACCTCCACGAATGCAGCCGCCA
ATGCATCCGCAAGGCGGGCTCATGGGGAACCAACAGCCGCCATCCCTGTA
TCCGTCAGCGCAAGACAATGACCAGGTCAGCGTCAGCCGGACGCGACATG
TCCACGACGGACCACGCAGCGACAATGTTCCAGAGACCAATGGCATGCCG
TCAGGGTCCGCAGTCCGACTGCGTCGTCACCCATGCACTGTGATTCCGTC
GCAGTCGCACGTGACTCCCAGACAGGTTCGGCGTACACGG
UFO06878.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:49:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7185-RA | 2862 | CG7185-RA | 364..1368 | 7..992 | 4380 | 96.9 | Plus |
| CG7185-RB | 2721 | CG7185-RB | 364..1151 | 7..794 | 3925 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:49:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 8313957..8314679 | 794..72 | 3600 | 99.9 | Minus |
| 3L | 28110227 | 3L | 8315071..8315139 | 75..7 | 345 | 100 | Minus |
| 3L | 28110227 | 3L | 8313063..8313153 | 882..793 | 330 | 93.4 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:49:04 has no hits.
UFO06878.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:21:49 Download gff for
UFO06878.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7185-RA | 342..1225 | 1..882 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:51:46 Download gff for
UFO06878.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7185-RA | 357..1240 | 1..882 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:30:11 Download gff for
UFO06878.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7185-RA | 357..1240 | 1..882 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:30:11 Download gff for
UFO06878.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 8313084..8313151 | 795..862 | 97 | <- | Minus |
| 3L | 8313957..8314676 | 75..794 | 99 | <- | Minus |
| 3L | 8315072..8315143 | 1..74 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:51:46 Download gff for
UFO06878.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 8306184..8306251 | 795..862 | 97 | <- | Minus |
| arm_3L | 8307057..8307776 | 75..794 | 99 | <- | Minus |
| arm_3L | 8308172..8308243 | 1..74 | 95 | | Minus |
