UFO06879.5prime Sequence
1071 bp (978 high quality bases) assembled on 2009-08-31
> UFO06879.5prime
CAGTCGACATGGCCCCACCCACGGTCCTGGTCACCGGAGGAGCCGGCTAC
ATTGGCTCCCACACGGTTCTGGAGATGCTCAATGCGGGCTACAACGTCAT
CTGCGTGGACAACCTGTGCAACGCCTACAGCAGCGGGGCCAAACTGCCGG
AGGCCCTCAGCCGGGTGCAGGAAATCACCGGCAAGAAGGTCAACTTCTAT
AGAGTGGACATCACGGACAGGGAGCAGGTGCGCTCCGTCTTCCAGGAGCA
CAAAATCGACATGGTGGCCCACTTTGCCGCCCTGAAGGCCGTGGGTGAGT
CCTGCCGCATACCTTTGCAGTACTACCACAACAACATGACCGGCACCAAT
GTCCTGCTGGAGGCGATGGCCGACAACAATGTCTTCAAGTTCGTGTACAG
CTCCAGCGCCACCGTATACGGTGAGCCAAAGTTCCTGCCCGTGACCGAGG
AGCATCCCACGGGCAACTGTACATCGCCCTACGGCAAGACTAAATATTTC
ACCGAGGAGATTCTCAAGGATCTGTGCAAGTCTGACAAGCGTTGGGCAGT
GGTTTCGCTGCGGTACTTCAACCCGGTGGGTGCCCACATCAGTGGTCGGA
TTGGCGAGGATCCGAACGGCGAGCCCAACAACCTGATGCCCTACATCGCA
CAGGTGGCCGTGGGTCGACGTCCCAGCCTGAGTGTCTACGGCAGCGACTT
TCCCACGCACGACGGCACCGGCGTGCGCGATTACATCCACATCGTGCACC
TGGCCGAGGGACACGTAAAGGCGTTGGACAAGCTGCGCAACATCGCGGAG
ACGGGCTTTTTCGCCTACAATTTGGGCACCGGCGTGGGCTACTCGGTGCT
GGACATGGTGAAGCGTTTGAGACGCCTCCGGCAAGAAGTCAACTACACTC
TGGTGGACCGACGGTCCGGAGATGTGGCCACTTGCTATGCGGACGCACGT
TGGCGGATAAGAAGCTGGGCTGGAAGGCCGAGCGTGCATCGACAGATGTG
CGAGGACCCGTGCGCTGCAGAACCAGACCCAACGGTATGCACAGCAGCTT
CTGACATTCTTTGGGGCGCGG
UFO06879.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:00:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Gale-RB | 1538 | CG12030-RB | 280..1312 | 9..1032 | 4880 | 98.7 | Plus |
| Gale-RA | 1757 | CG12030-RA | 499..1531 | 9..1032 | 4880 | 98.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:59:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 650582..651062 | 538..1012 | 2060 | 98.1 | Plus |
| 3L | 28110227 | 3L | 650231..650523 | 247..539 | 1465 | 100 | Plus |
| 3L | 28110227 | 3L | 649180..649419 | 9..248 | 1200 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 22:59:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dyak\HeT-A | 5691 | Dyak\HeT-A YAKHETA 5691bp | 5077..5115 | 415..377 | 123 | 79.5 | Minus |
UFO06879.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:21:48 Download gff for
UFO06879.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12030-RA | 533..1569 | 1..1032 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:08:52 Download gff for
UFO06879.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Gale-RA | 495..1531 | 1..1032 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:32:17 Download gff for
UFO06879.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Gale-RA | 495..1531 | 1..1032 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:32:17 Download gff for
UFO06879.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 650233..650523 | 249..539 | 100 | -> | Plus |
| 3L | 649180..649419 | 9..248 | 100 | -> | Plus |
| 3L | 650584..651085 | 540..1032 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:08:52 Download gff for
UFO06879.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 650233..650523 | 249..539 | 100 | -> | Plus |
| arm_3L | 649180..649419 | 9..248 | 100 | -> | Plus |
| arm_3L | 650584..651085 | 540..1032 | 97 | | Plus |
