UFO06883.5prime Sequence
1063 bp (972 high quality bases) assembled on 2009-08-31
> UFO06883.5prime
CAGTCGACATGGCGCTGCTGACCATGATAGCCAGGGTCATCGATGGCCTT
CCTCTGGTGGGGACCATGCAGGATGACGAGCAGAGCGGACGCAGCATACT
GGACTACCAAAACCAGGCTAAGATGCTCTTCCGCAAGCTGGGTACCCACT
CCCCGGCTCGATGCAGTATCGAGACCGGACCCTACCTATTCCACTACCTA
ATCGAGAACGACGTCTGCTACCTGGTGATGGTGGACAAGATGTACTCAAA
GCGACTGGCCTTCAATTACCTGGAGGACCTGGCCCAGGAGTTCCATGCTA
ACTACGGCCGGCGAGTAAACTCAGTGACTCGCCCATACGCATTCATCGAG
TTTGACGTGTACATACAGAAGGCGAAAAAACAGTTGACGGACCGCAGACG
CAACATCAGCAACATCAACACACAGCTGCAGGATGTGCAGCGCATCATGG
TGCAAAACATTGACGACGTGCTCCAACGTGGCACAGTGCTGGCGGAACTC
GACACCAAGACCCAGAACCTATCGATGATGTCACAGAAGTACAAGAAGGA
CGCCAAGCTGCTCAACCGAAAGTCCATGTACGTGAAGGCGATGGCCTTGG
GCATGATACTTCTAGTGTTCATCATGTATTTCTGGGTTCTGGCAAGCTTT
CTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAA
TCATAATCATAATCATAATCACAACTAGCCTAGGAGATCCTGGTCATGAC
TAGTGCTTGGATTCTCACCAATAAAAAACGCCCGGCGGCAACCGAGCGTT
CTGAACAAATCCAGATGGAGTTCTGAGGTCATTACTGGATCTATCAACAG
GAGTCCAGCGAGCTCGATATCAAATTACGCCCGCCCTGCCACTCATCGCA
GTACTGTGTATCATAGCATTCTGCGACATGCAGCATCACAAACGGCATGA
TGACTGATCGCAGCGCATCAGCACTGTCGCTGCGTATAATATTGCCATGT
GAACGGGGCGAGAGTGTCAATGCCCGTTATCAACTGGTGACTCACCAGAT
GCTGAAACGAAAC
UFO06883.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:04:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Sec22-RA | 1743 | CG7359-RA | 409..1042 | 8..641 | 3170 | 100 | Plus |
| Sec22-RB | 1749 | CG7359-RB | 409..1048 | 8..641 | 3100 | 99.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:04:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 806969..807270 | 194..495 | 1510 | 100 | Plus |
| X | 23542271 | X | 807353..807499 | 495..641 | 735 | 100 | Plus |
| X | 23542271 | X | 806630..806742 | 81..193 | 565 | 100 | Plus |
| X | 23542271 | X | 806484..806559 | 8..83 | 380 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 23:04:54 has no hits.
UFO06883.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:21:46 Download gff for
UFO06883.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7359-RA | 406..1049 | 1..645 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:11:59 Download gff for
UFO06883.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sec22-RA | 402..1045 | 1..645 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:35:02 Download gff for
UFO06883.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sec22-RA | 402..1045 | 1..645 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:35:02 Download gff for
UFO06883.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 806477..806559 | 1..83 | 96 | -> | Plus |
| X | 806633..806742 | 84..193 | 100 | -> | Plus |
| X | 806969..807270 | 194..495 | 100 | -> | Plus |
| X | 807354..807502 | 496..645 | 98 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:11:59 Download gff for
UFO06883.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 700510..700592 | 1..83 | 96 | -> | Plus |
| arm_X | 700666..700775 | 84..193 | 100 | -> | Plus |
| arm_X | 701002..701303 | 194..495 | 100 | -> | Plus |
| arm_X | 701387..701535 | 496..645 | 98 | == | Plus |
