UFO06887.5prime Sequence
1070 bp (970 high quality bases) assembled on 2009-08-31
> UFO06887.5prime
CAGTCGACATGTCTGCTGAAGCCGAAGCAATCGTCACAACGGCAACTGCC
GATGTATCATCCCCAAGCAAGACAGTGGCTGTGGAGCCCGTTGCTGCTGA
TACAACTCCGGACAATGCTCCGGCTGTGTCCACCGAGGGAAGCGGAAAGG
CAGAGCAGGAACGGGCAGAGAAAATACTTAAAGGCAAGGAGCTGTTCAGC
CAGGGATCGCGCAACTTCCTGGTCAAGAGCTACGACGAGGCAGCTGACGA
GCTGAGCCAGGTGTGCCAACTGTACGAGGAAGTCTACGGGGAACTGGCCG
ATGAGCTGGGTCAGCCCCTATTGCTCTATGCAAAGGCATTAATTGCAATG
GCCTTGGACGAGAACAAAGTGATTGATGTGCCTGACGAGGCTGCCGATGA
TGATGACGAGGATGTGGACGACGACGAGGAAGAAAGTGCCGAAGATGGAG
CGGCTAAGAAGGAGGAAAAGAAAGACACCAAGGAGGCAGCAAATGGTGCA
AGCAGCTCTAACGGCAAGGAACTGGACACCATCAAGGAAGGGTCCGATGA
GGCAGACTCTACCGGGGAAGCCGAGCAAGCTCAAAGTGATGAAAAGCCCT
CTAAGAAGGTACCGACCGGCGTGGATGAGGTCAGCAGCAGCAATGGCGGT
GGCGGAGCTGCCGTCAACGATGACGAGCGACCGAGCACATCGAATGGTGA
GGTCACAGCTAGTTGTTCCAATGGTGCAGCACCTGCTGTAGAGGAAGAAC
CCGAAGAAGAGGAAGGAGTTAGCGGAAGTTTGCAGTTGGCCTGGGAAATT
CTAGAGGCGGCTGCTCAGATCTTCTCGCGCCAAGGGCTCAGTGGACTCCC
CTACTTGGCTGAGTTCAGACTGAGCTGGCTAACATTGAGTTTGAGATGAA
TACTAGAGGCGCACGCGAGATTATGAGAAGCACTGAGATCACGGAGAGCT
GCCCACAGAAACGACGTGCTTTGCGAGTGCATACAGATCGGGCTGACTAT
TGATGCAGCACTCACAGACGACGACAGCCCTGCTCCATCAGCGGTGATCG
AGAAGAATCGCGAAATAGCA
UFO06887.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:31:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8223-RB | 2253 | CG8223-RB | 470..1488 | 9..1010 | 4680 | 98.3 | Plus |
| CG8223-RA | 1999 | CG8223-RA | 216..1234 | 9..1010 | 4680 | 98.3 | Plus |
| CG34135-RC | 7398 | CG34135-RC | 3552..4156 | 925..326 | 2900 | 99.2 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:31:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 8752514..8753102 | 326..911 | 2815 | 99.3 | Plus |
| 3R | 32079331 | 3R | 8752082..8752398 | 9..325 | 1585 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:31:50 has no hits.
UFO06887.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:21:44 Download gff for
UFO06887.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8223-RA | 199..1231 | 1..1014 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:48:29 Download gff for
UFO06887.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8223-RA | 207..1239 | 1..1014 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:09:36 Download gff for
UFO06887.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8223-RA | 207..1239 | 1..1014 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:09:36 Download gff for
UFO06887.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 8752073..8752398 | 1..325 | 98 | -> | Plus |
| 3R | 8752514..8753118 | 326..925 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:48:29 Download gff for
UFO06887.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 4577795..4578120 | 1..325 | 98 | -> | Plus |
| arm_3R | 4578236..4578840 | 326..925 | 99 | -> | Plus |
