UFO06888.5prime Sequence
1081 bp (993 high quality bases) assembled on 2009-08-31
> UFO06888.5prime
CAGTCGACATGACCCAATATCTGCCGCCGAATCTGCTGGCGCTGTTCGCG
GCACGGGAGCCCATCCCGTTCATGCCGCCGGTGGACAAGCTGCCGCACGA
GAAGAAGTCTCGCGGCTACCTGGGAGTGGCCAAGTTCATGGCCGATTTCG
AGGATCCCAAGGACACGCCGCTGCCGAAAACGGTGGAAACGCGTCAGGAG
CGGCTGGAGCGACGCCGGCGCGAGAAGGCCGAGCAAGTGGCCTACAAGCT
GGAGCGTGAGATAGCGCTGTGGGACCCCACAGAGATCAAAAATGCCACGG
AGGACCCGTTTCGCACGCTGTTCATTGCACGCATCAACTACGACACGTCC
GAGTCGAAGCTGCGGCGTGAGTTCGAGTTCTACGGGCCCATCAAGAAGAT
CGTCCTGATCCACGACCAGGAATCAGGTAAACCCAAGGGCTACGCCTTCA
TCGAGTACGAGCACGAGCGGGACATGCATGCCGCCTACAAGCACGCCGAT
GGTAAGAAGATCGACAGCAAGCGCGTCCTGGTGGACGTGGAGCGGGCTCG
CACGGTCAAGGGCTGGCTGCCCCGACGCCTGGGCGGCGGTCTGGGTGGAA
CGCGCCGCGGCGGCAACGATGTCAACATTAAGCACTCCGGCCGCGAGGAC
AACGAGAGGGAACGCGAGCGCTACCGGCTGGAGCGGGAGCGTGAGGATCG
CGAGGGTCCTGGACGCGGCGGCGGCTCCAATGGCCTGGATGCCCGGCCCG
GACGCGGTTTCGGTGCGGAACGTCGACGTTCCCGCTCCAGGGAACGCCGC
GACCGTGAACGAGATCGCGGACGGGGCGCTGTGGCTAGCAACGGTCGCTC
GCGCAGCCGTTCTCGCGAGCGCAGAAAACGACGAGCGGGCAGCCGGGAGC
GGTACGACGAGTTCGACCGCCGCGATCGGCGGGACAGGAGCGCGAGCGTG
ATCGCGATCGCGAGCGTGAGAAGAAAAAGAAGCGCCTCCAGTCTCGCGAC
GCGATCCTCCAAGGAGCGTCCGACGAGCGAGAAAGAAGGATCGAGAACGC
GCACGATCGGCGGCATGTCAGGACCAGCCGA
UFO06888.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:18:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| snRNP-U1-70K-RC | 2948 | CG8749-RC | 197..1271 | 9..1070 | 4995 | 98.4 | Plus |
| snRNP-U1-70K-RA | 1834 | CG8749-RA | 197..1271 | 9..1070 | 4995 | 98.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:18:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 6970471..6971462 | 999..9 | 4865 | 99.6 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:18:49 has no hits.
UFO06888.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:21:43 Download gff for
UFO06888.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| snRNP70K-RA | 190..1270 | 1..1070 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:02:44 Download gff for
UFO06888.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| snRNP-U1-70K-RA | 191..1271 | 1..1070 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:47:57 Download gff for
UFO06888.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| snRNP-U1-70K-RA | 191..1271 | 1..1070 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:47:57 Download gff for
UFO06888.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 6970388..6971468 | 1..1070 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:02:44 Download gff for
UFO06888.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 6970388..6971468 | 1..1070 | 98 | | Minus |
