UFO06890.5prime Sequence
1102 bp (1003 high quality bases) assembled on 2009-08-31
> UFO06890.5prime
CAGTCGACATGGACCTGGGCCGCTGGCTGCTGCAGCTGGGCGTGCACATG
CTGCTGGTTGTGCGGCGCATTCAGTGTCTACGTGTGACTGACATCAATGT
GCCACAAATTGTTGATTTTCGTGATAACGTGACATTATCCTGCAGCTATG
ACATAAGTGGTCACACGTTAAATTCGGTTAAGTGGTACAAAAACGGAAAG
GAGTTTTTTAGATACTCGCCCCTCACCCCGCCCACCTACATTCCGTTCGC
CGTTGAGGGCGTGCAGCTGATCGATGACGGCAACGAGTGCAACGAATCCT
CCTGTCGCGTGGAGCTCAATTTATTGGGCGTCAAGTCGTCGGGCGTCTAC
AGGTGCGAAGTGTCCGGTGACGCTCCCCACTTCCAGCTAACTGCACGCGA
TGCCAACATGACCGTCGAAGCACTTCCCCAAAACAATCCACTCATCAGCA
GCTTTCACTCAACTTATCGCTTTAATGACTTCGTAGAGGTCAACTGTAGT
ACAGATTTCTCCAGCCTTTTCACACGGATTACCTGGTACGTCAATGGGAT
AAAGGTTTCTCTGGTGGATCTACTACCCTCTTTTGAGACCACCATAGTAG
CCCATGGATACAGCATGCGACGCATTGTTTCCCAGCTCAATTTCTACGCC
AATGAACCACGTTTCCATCAATTGCAATTGCAAAAACTGATCCAGCAAAA
GCGGACAATTTCACCAGCAAGACTTGGGCTCGAGCTGCGTTGTGTTGCGG
AGATCGATCGGTATCCTCATCTGCAAAGAGAAAGGCACTATGTTCGCCCA
GCTCTTCAGGACGATATCGATCAGAAAAATCAGAAGCTGATCAACTCGAG
ATCGGGTGCCACTCCAAATTCACAAGTGCAGCATCTGCTGCTGGTGCTAT
TTCGATGACGATGACCGCAGTGCGACTCTTCACACGCTGACATTTCATAT
GCGCACGAAGTCGGCGCGCTATAAAATGCGCGACGCAGCTTTCTAGAACA
TTCGGTTGGCGCGCGGCCCAGGTAGTGGTCATAATCATATCATATCTATC
TAATCCAACTAGGCTAGGAGATCTGTCATGACTATGCTTGCATTCCACAA
TA
UFO06890.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:03:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| beat-Vb-RB | 1631 | CG31298-RB | 366..1340 | 9..978 | 4705 | 99.3 | Plus |
| beat-Vb-RA | 1826 | CG31298-RA | 561..1535 | 9..978 | 4705 | 99.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:03:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 12933532..12933836 | 553..857 | 1430 | 99.3 | Plus |
| 3R | 32079331 | 3R | 12931574..12931784 | 210..420 | 1055 | 100 | Plus |
| 3R | 32079331 | 3R | 12928864..12929018 | 57..211 | 775 | 100 | Plus |
| 3R | 32079331 | 3R | 12933339..12933476 | 419..556 | 690 | 100 | Plus |
| 3R | 32079331 | 3R | 12934394..12934522 | 855..978 | 395 | 96.1 | Plus |
| 3R | 32079331 | 3R | 12918721..12918769 | 9..57 | 245 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 23:03:13 has no hits.
UFO06890.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:21:40 Download gff for
UFO06890.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| beat-Vb-RA | 552..1541 | 1..985 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:10:51 Download gff for
UFO06890.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| beat-Vb-RA | 552..1541 | 1..985 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:34:02 Download gff for
UFO06890.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| beat-Vb-RA | 552..1541 | 1..985 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:34:02 Download gff for
UFO06890.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 12933534..12933834 | 555..855 | 99 | -> | Plus |
| 3R | 12918712..12918769 | 1..57 | 93 | -> | Plus |
| 3R | 12928865..12929018 | 58..211 | 100 | -> | Plus |
| 3R | 12931576..12931784 | 212..420 | 100 | -> | Plus |
| 3R | 12933341..12933474 | 421..554 | 100 | -> | Plus |
| 3R | 12934395..12934530 | 856..989 | 93 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:10:51 Download gff for
UFO06890.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 8744434..8744491 | 1..57 | 93 | -> | Plus |
| arm_3R | 8754587..8754740 | 58..211 | 100 | -> | Plus |
| arm_3R | 8757298..8757506 | 212..420 | 100 | -> | Plus |
| arm_3R | 8759063..8759196 | 421..554 | 100 | -> | Plus |
| arm_3R | 8759256..8759556 | 555..855 | 99 | -> | Plus |
| arm_3R | 8760117..8760252 | 856..989 | 93 | -> | Plus |
