UFO06894.5prime Sequence
1089 bp (1009 high quality bases) assembled on 2009-08-31
> UFO06894.5prime
CAGTCGACATGGCTATTCCGCCACCCCCGGGACCACCACCGCCGCCAGGA
CCTCCACCGCCTCCGGCGATGGGTGGTCTTAAATTGGGCGGCGCGGGAGG
AGCAGACGCCCGATCTGCACTGCTGAGTTCGATCCAGAAGGGAACAAAAC
TGAAGAAGACCACCACGGTGGACAAGAGTGGGCCAGCGCTGTCTGGCAAG
GTGTGCGGAGGAGATGGAGGAGCAGGTATCGGAGCTAAGCGAACCCTCAA
CAACAACACCAGCACCAGCAATCACAACAACAGCAGCAGTAGCAGCAATG
GCCTTGGCAATGGAACCCCCAAATTGGGAGGCCTGTTCGAAGGCCTCTCG
CAAATGCCAAAACTGAAGCCCGTGAACGGCATTCGCGCAACGCCATCCGC
CGGCTCGGCAGCAACAACGACATCGAAATCCACAACGAACTCATCCGCTC
AGCAGCGGAGCAACAGCCCCCCCGCCGCGACGAGCGCCTCGAATGCCAGC
AACGGACCCATGGACTTCAACACGGAGCTCACCAAGCACTTGACGTTGAA
GCGCCAAAAACAGCAGCAGCAGCAACAACCACAGCCACCAACCAACAACA
CACATATCAATGCAACAGAAGCCAATCTGAGAACAAATCGGGGACCACCA
CCGCAACCGCCAAAGTCAGCCAACTCAAATGATTCGATCTTGGAGCGCAT
GAACATCCCCCGCACAGCGCCGACACCCCCCTTCGGCAACAGTTCGAGTG
TCAAAGCGGCATCGCCCACGCTCTCGGACAGCGGCAGCAACAGCAGTGGG
AGTGGAGGTGGAAGTGGAAGTGTCAAGAGCAAGGCGGCCAACCTAAATAT
CTCGTTAGGCAATAGTTTTGTAAATAGTTCAAAATCAACCGTGAGTGCCT
CGACCGCGTCCTTAAACAGCAGTCTAACCTCCTCGACGGGATCAGTACGC
AATCTGCGCAAATAAGTCACTCTATTTGTGCAGCAGTGCTCTAGTTCCGG
TCGAGTCTGGTGGTGGTTATGCATCTGGTGCATAAATCCTCGCCACCTCA
CGCAGAATAGCACGCCGTCGGGAGCTAAACTGTTATCTG
UFO06894.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:27:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Vrp1-RK | 3216 | CG13503-RK | 193..1264 | 9..1071 | 5045 | 98.8 | Plus |
| Vrp1-RJ | 3888 | CG13503-RJ | 671..1742 | 9..1071 | 5045 | 98.8 | Plus |
| Vrp1-RI | 3410 | CG13503-RI | 193..1264 | 9..1071 | 5045 | 98.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:27:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 22112210..22112588 | 387..9 | 1895 | 100 | Minus |
| 2R | 25286936 | 2R | 22111862..22112140 | 665..387 | 1395 | 100 | Minus |
| 2R | 25286936 | 2R | 22111328..22111511 | 847..664 | 920 | 100 | Minus |
| 2R | 25286936 | 2R | 22110732..22110938 | 1047..848 | 615 | 94.2 | Minus |
Blast to na_te.dros performed 2014-11-28 19:27:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2316..2666 | 248..598 | 262 | 60 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6799..7312 | 207..718 | 242 | 53.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2490..2921 | 248..678 | 217 | 56.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2605..3012 | 237..651 | 211 | 56.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2337..2889 | 248..794 | 194 | 53.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6735..6826 | 218..310 | 192 | 68.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6533..6960 | 251..677 | 191 | 56.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6722..6945 | 248..468 | 186 | 58.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6732..6793 | 237..298 | 184 | 77.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2347..2822 | 218..678 | 180 | 55 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2407..2468 | 237..298 | 166 | 74.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2421..2482 | 248..309 | 166 | 74.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2561..3011 | 221..662 | 166 | 55 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1545..1586 | 248..289 | 165 | 88.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6814..7050 | 387..635 | 161 | 58.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1517..1575 | 244..302 | 160 | 74.6 | Plus |
| TART-A | 13424 | TART-A 13424bp | 91..201 | 232..345 | 157 | 63.5 | Plus |
| TART-A | 13424 | TART-A 13424bp | 11269..11379 | 232..345 | 157 | 63.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2783..3031 | 219..465 | 153 | 56.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6830..7259 | 217..631 | 149 | 54.8 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1062..1167 | 209..312 | 147 | 63.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2347..2440 | 209..297 | 143 | 64.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6735..6826 | 209..298 | 140 | 63 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2779..2838 | 237..296 | 138 | 70 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1095..1143 | 249..297 | 137 | 75.5 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1059..1126 | 258..322 | 135 | 69.1 | Plus |
| gypsy11 | 4428 | gypsy11 GYPSY11 4428bp | 956..1022 | 236..298 | 135 | 73.1 | Plus |
| Doc2-element | 4789 | Doc2-element DOC2 4789bp | 550..590 | 248..288 | 133 | 80.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2775..2824 | 248..297 | 124 | 72 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2917..2978 | 249..310 | 121 | 66.1 | Plus |
| TART-A | 13424 | TART-A 13424bp | 896..953 | 248..306 | 121 | 69.5 | Plus |
| TART-A | 13424 | TART-A 13424bp | 12074..12131 | 248..306 | 121 | 69.5 | Plus |
| Dvir\Uvir | 6564 | Dvir\Uvir VIRUVIR 6564bp | 4490..4555 | 230..294 | 120 | 66.7 | Plus |
| Dyak\TART | 8444 | Dyak\TART TARTYAK 8444bp | 7144..7237 | 273..371 | 114 | 60.6 | Plus |
| TART-C | 11124 | TART-C TARTC 11124bp | 8597..8690 | 273..371 | 114 | 60.6 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1071..1116 | 249..297 | 112 | 73.5 | Plus |
UFO06894.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:20:28 Download gff for
UFO06894.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Vrp1-RI | 193..1264 | 9..1071 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:58:37 Download gff for
UFO06894.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Vrp1-RI | 193..1264 | 9..1071 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:58:37 Download gff for
UFO06894.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 22110706..22110938 | 848..1071 | 94 | <- | Minus |
| 2R | 22111328..22111509 | 666..847 | 100 | <- | Minus |
| 2R | 22111862..22112139 | 388..665 | 100 | <- | Minus |
| 2R | 22112210..22112588 | 9..387 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:20:28 Download gff for
UFO06894.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 17998211..17998443 | 848..1071 | 94 | <- | Minus |
| arm_2R | 17998833..17999014 | 666..847 | 100 | <- | Minus |
| arm_2R | 17999367..17999644 | 388..665 | 100 | <- | Minus |
| arm_2R | 17999715..18000093 | 9..387 | 100 | | Minus |
