UFO06895.5prime Sequence
1041 bp (924 high quality bases) assembled on 2009-08-31
> UFO06895.5prime
CAGTCGACATGTCGGACACAATCTCTTTCGAGTTGGGCTCAGCTGCCGAC
CGGCCCCCCAACAGGTTTCAAGTGAACCCGGTCAACGGCAACAGTCGTAA
GTCGCAGGGAGCGGATGGCCCAGGATCCGGATCAGGAGCGGGAGCTGGAG
CAGGAGCAGGAGCTGGGGAGGATGGGCCGCACGAGGTCTACCGCCGACTA
ACAAACGCCGAGGGCGAGCTGCTCGAGGACGACACATTCGATGCGACACA
AATGCTCAACCAACGACAGCCCAGGCAGCAGAGGCAATCAATCAAAAGCA
GTTTCCGCGACAAGGATAAACCGTCAAGGTTCAAGGATCTGCAAACGACG
ACCCGCTTCCAGGTGGATCCCCAAAATGAGGAGTCCGACGAGTCCAATGA
CTCGCAGGAGGAGCGCGAGCTGCTGGACAACGAGTACGACACAAAATATG
GTAAAAGTTTCCGGCATTTCACCAGAGAGGCGTTACCCCGCCTGGACAAC
TACCGCAACATGATGTCCATCCAGGCGGCCTACCGTCCAACGCTCGACGA
GCTGCATAACGCCACGCTGGTGGGCAAGAACACGCACAGCTTGACACGTA
ATCAGGACCCGGAGTCGGGCATCCTGAATGGGGTCCTGAAATTCGGTTGG
ATCAAAGGTGTGCTCGTCCGCTGCCTGCTGAACATCTGGGGCGTGATGCT
GTTCCTCCGGCTCAGCTGGGTGGTGGGTCAGGCGGGCGTCATCGAGGGAT
TCGTATTAATTCTGACAACGACTGCTGTCACGACCATCACGGGCCTTGTC
GATGTCGGCGATAAGCACTAATGGTGTCATCAAAGGGGGTGGCACATACT
ATATGATATCCCCGGTCTCTGGGGCCGGAGTTTGGTGGATCCATCGGTTT
GATATCTCCCTGGCCAATGCGGTGGCGTGTGCATGTATGTGTCGCTTCTG
CGAGTCTATGGTGGCCATGATGACGACCTTGCTGGAGATCATAGATGGTG
GCGTCAGATGTGCCATCATTGTTGCATAACATACTGCTGCT
UFO06895.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:31:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ncc69-RG | 4762 | CG4357-RG | 1180..2222 | 9..1041 | 4840 | 98.4 | Plus |
| Ncc69-RF | 4051 | CG4357-RF | 409..1451 | 9..1041 | 4840 | 98.4 | Plus |
| Ncc69-RE | 4044 | CG4357-RE | 354..1396 | 9..1041 | 4840 | 98.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:31:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 12379138..12379413 | 284..9 | 1380 | 100 | Minus |
| 3L | 28110227 | 3L | 12374285..12374548 | 841..577 | 1275 | 99.6 | Minus |
| 3L | 28110227 | 3L | 12376436..12376618 | 464..282 | 915 | 100 | Minus |
| 3L | 28110227 | 3L | 12376001..12376116 | 578..463 | 580 | 100 | Minus |
| 3L | 28110227 | 3L | 12374038..12374211 | 1005..838 | 485 | 93.1 | Minus |
| 3R | 32079331 | 3R | 5493354..5493408 | 726..672 | 185 | 89.1 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:31:24 has no hits.
UFO06895.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:21:37 Download gff for
UFO06895.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ncc69-RB | 401..1454 | 1..1041 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:48:20 Download gff for
UFO06895.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ncc69-RE | 343..1396 | 1..1041 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:09:25 Download gff for
UFO06895.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ncc69-RE | 343..1396 | 1..1041 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:09:25 Download gff for
UFO06895.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 12374009..12374210 | 839..1030 | 92 | <- | Minus |
| 3L | 12374288..12374546 | 579..838 | 99 | <- | Minus |
| 3L | 12376001..12376115 | 464..578 | 100 | <- | Minus |
| 3L | 12376437..12376616 | 284..463 | 100 | <- | Minus |
| 3L | 12379139..12379424 | 1..283 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:48:20 Download gff for
UFO06895.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 12367109..12367310 | 839..1030 | 92 | <- | Minus |
| arm_3L | 12367388..12367646 | 579..838 | 99 | <- | Minus |
| arm_3L | 12369101..12369215 | 464..578 | 100 | <- | Minus |
| arm_3L | 12369537..12369716 | 284..463 | 100 | <- | Minus |
| arm_3L | 12372239..12372524 | 1..283 | 98 | | Minus |
