UFO06896.5prime Sequence
1070 bp (972 high quality bases) assembled on 2009-08-31
> UFO06896.5prime
CAGTCGACATGAGGCTACTCAAGTGTTCCGTGTTTGTGTATCTGTTCCTG
ATCTTCGATGCCGGCCATGCCTTCAGCATCATTGGCCTCAACAAACAGAT
GCTCTACGAGTACGAGGGCAATGTCCTGGTGGGTGCAAAGCCCCAGGACG
AGGGCCACCAGGCGCCACCCACCACCGGATGGATTGTGCGGGGCAAGCTG
ACGCTCCAGCGGCAAAGCGAGCTGGTCTTGGCTGCGGCGCTGGTCATAGA
CGATGTAACGCTGAACAACTCCGGCGAGAAGTTCCTGCAGAACAAGGAGA
TGTACCCGCCCTACAAGCCCTTCAAGATCGCTCTCACCAAGGATGGCGCC
ATCTCACATGTGGTCTTCAAGGAAGGCGATCCCATATGGAGCATGAACTT
CAAGCGGGCCATCGCATCGGTGCTGCAGTTCCAGATGAAGTCCAGCGGGG
CCTTCGTCGTGGATGAGCTGGGTATTCACGGCACTTGCCGCACGGAGTAC
TTTGTGTCCAACAGGACAAACTACATCTCCATCCGCAAAACGCCGGAGGT
CAAGACCTGCAAGCCGTACTCGGAGGCGGTTCACACTACACGCAGCAACG
TGCCGCCCAATACGTGCGAATTCGATCACCAGAAGAGTGTGATCATTGGC
AATGAGGCCATCTACGGGATGTCACCGCACAACGAAACGGGTTACTATCT
GAGCATGGCCCATGCCAAGGGCACAACCCTGATCCACACGTTCGAATCCA
CGGGAGAAGCACAATTCATTAACTCGGAGTTGCTGCTCAATTTCCTTAAC
GAGACGCCCATCGACAATCCCATCGATATTGAAACCTCAATGGCAGCAGA
GCCATCCAACCTGGAGCTGCAGCGGCTGGATCCCAACGATCCCACTGGAG
GTCGTAGCCCTCAGCAGCAGGAGACGCTGATTGCCAAGGCGGGGACGCTC
TAGAACAGTCTGGCCGAGCACTAGAGAACACGGGATTCAAGTCTCGAGCC
CTACGACTCACTCTCCTCGACGTGAATCAGCTCTCAGCGGATGACTTTGA
ATCGCTCACTAACTGATCCG
UFO06896.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:53:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| cv-d-RA | 4744 | CG31150-RA | 273..1334 | 8..1062 | 4940 | 98.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:53:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 15851163..15851690 | 992..466 | 2485 | 98.5 | Minus |
| 3R | 32079331 | 3R | 15851750..15851978 | 467..239 | 1145 | 100 | Minus |
| 3R | 32079331 | 3R | 15852728..15852927 | 239..40 | 1000 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:53:25 has no hits.
UFO06896.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:21:36 Download gff for
UFO06896.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31150-RA | 266..1341 | 1..1070 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:54:22 Download gff for
UFO06896.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cv-d-RA | 266..1341 | 1..1070 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:32:06 Download gff for
UFO06896.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cv-d-RA | 268..1343 | 1..1070 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:32:06 Download gff for
UFO06896.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 15851077..15851688 | 468..1070 | 96 | <- | Minus |
| 3R | 15851750..15851977 | 240..467 | 100 | <- | Minus |
| 3R | 15852728..15852927 | 40..239 | 100 | <- | Minus |
| 3R | 15853278..15853314 | 1..39 | 92 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:54:22 Download gff for
UFO06896.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 11676799..11677410 | 468..1070 | 96 | <- | Minus |
| arm_3R | 11677472..11677699 | 240..467 | 100 | <- | Minus |
| arm_3R | 11678450..11678649 | 40..239 | 100 | <- | Minus |
| arm_3R | 11679000..11679036 | 1..39 | 92 | | Minus |
