UFO06904.5prime Sequence
1116 bp (1035 high quality bases) assembled on 2009-08-31
> UFO06904.5prime
CAGTCGACATGGTCATGGATGCGACCCAATCGCAGCAGCCTTCGCCGCAA
TCTGTGGGACGCGAGTTTGTCCGCCAGTACTACACGCTGTTGAACAAGGC
GCCCAACCACTTGCATCGCTTCTATAACCACAACTCGTCGTACATCCATG
GAGAGTCCAAGCTGGTGGTCGGTCAGCGGGAGATCCACAACCGAATCCAG
CAGCTGAACTTCAACGATTGCCACGCGAAGATCAGCCAGGTTGATGCCCA
GGCCACTTTGGGCAACGGTGTGGTGGTTCAGGTCACCGGGGAGCTATCCA
ATGATGGCCAGCCGATGCGGCGTTTTACCCAGACGTTCGTTCTGGCCGCT
CAGTCGCCGAAGAAGTACTACGTGCACAACGACATCTTCCGCTATCAGGA
TCTCTACATCGAGGACGAGCAGGATGGCGAGTCGCGATCGGAGAACGATG
AGGAGCACGATGTGCAGGTCGTCGGTGGCACTGTGGATCAAGCTGTGCAG
GTGGCCGGCGATGTAGTTGCCCAGCAGCCGCAGCAACAGCAGGCTCCTCC
GCAGCCACAGGCTCAGGTCGTGGTGCCCCAGCAGGTAGCTCCTGTAGCGG
CCGGTGGTGCTGCCCCACAGCAGATCTTCTACCCATTGCCAGCGGGTGCT
GCCGCCGGACGTCCTGTGGCTGTTTTGCCACCAGCTCCGCAAGCCGCTGC
TGTTCCACTGCCCGCGCAGTTCACCGTTCCGCCGCCACAGCCCATCCAGA
ACGGTGTGGTGTCGCACGAGGAGCTGCAGCAGCAGCATGTGCTGGTCCCA
CCCAGCGTGTCTCCCCTGGTACAGCAGCAGCAGCCGACCGGCACGCCTGT
GTTGCCCATTGTTCCAGTGCCAAGCGCGGGCTTCCAACAGTCGCCACTGG
TGGCACACAGCTCATCAGCAGCAGCAGCAGCAGCACGGCACAGCTGCCCC
CGCAGCAGCAGCAGCAGCAGCACTATCAGCAGCAGCAGCTTTGCACAGCA
GCACACCGCTGGCTGAGCCGAGGAGTGGAGGTGGCGCCAAGCAGCTAAGC
CTCCACGCCGGTGAGATTCAGGAACATTCCGACCGCACGCAGGGAAGTTC
CAAGGCGCCCAGAGCA
UFO06904.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:18:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| rin-RG | 5382 | CG9412-RG | 349..1415 | 9..1059 | 4925 | 98.3 | Plus |
| rin-RF | 3167 | CG9412-RF | 248..1314 | 9..1059 | 4925 | 98.3 | Plus |
| rin-RE | 3501 | CG9412-RE | 582..1648 | 9..1059 | 4925 | 98.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:18:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 13649069..13650036 | 9..972 | 4660 | 99.5 | Plus |
Blast to na_te.dros performed 2014-11-28 22:18:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2352..2390 | 522..560 | 123 | 79.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6752..6884 | 522..655 | 117 | 59.1 | Plus |
| Dmer\R1A3 | 3772 | Dmer\R1A3 MERCR1A3 3772bp | 631..711 | 842..764 | 112 | 61.7 | Minus |
UFO06904.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:19:49 Download gff for
UFO06904.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| rin-RC | 729..1803 | 1..1062 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:02:17 Download gff for
UFO06904.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| rin-RB | 344..1418 | 1..1062 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:47:34 Download gff for
UFO06904.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| rin-RE | 577..1651 | 1..1062 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:47:34 Download gff for
UFO06904.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 13649064..13650138 | 1..1062 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:02:17 Download gff for
UFO06904.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 9474786..9475860 | 1..1062 | 97 | | Plus |
