UFO06906.5prime Sequence
1110 bp (978 high quality bases) assembled on 2009-08-31
> UFO06906.5prime
CAGTCGACATGTTTCCTGGTGGAAACGGAAACGCCGATTTGGGCTACAAC
AAGCATGCCCACGTCCATGGACTTGGACAACATGGCCATGGGCACAACCA
TAATCACAATCAGTTCCTGGCGCAGCCCCCACCACCCCCCACACATTTTT
CACTGCCCTCCGGGGGCGGTCAGGGCATGGTGACGCCCATGGTAGCCGCC
GGCCTGCCGCTCGCCATGCAGGGTGGCGTTGGCATCGATTGGGCGCAGCT
CGCCCAGCAATGGATCCACATGCGGGACGCTACTCCGGTGCCCATGCCCC
TGGCCCCTCCGCCGCCCATCATCAGCAATTTGCGAGAATACCACCAGCAG
ACGCTAGCAATGCCGGTGCCCAGTGTGGTCAGGGCGGGATTTCCGCAACT
AGAGGAGCACGGCGAGGCGGATATGGACATGGACGATGAGAATGATCGGG
GACATAGCACTGAGACACCCCCACCGCCAGCACCTTTGGTTACGCAATCC
CAATGGCTGGCGGGCACCGAAGTGGCTGGTCAGATCCCAGACGCCTCCAA
CGGAGCGGCTGTCACGCTGGGCAAGCAGCCATGGACCGGGTGGCAAATGC
AGACCGACAAATCAGGCAATTCCACGGCGCATATACCATCTCTGCTGAAG
CTGAACGTGAGCAATCCCAATGAGCCGCACCAACAGCTGCAGTTGCAGTT
GCAAGCGCATCAGCAGCAGCAGCAGCAGCATGCTCCCCAACCAACGCATC
CACACCATCCACCAGCACATCAGCCGCATGCACATCCACACCACCTAACA
CCACATACACACCTGCCGCCACAGCACACACAGCAGACGCATGCGGAAAG
CGGAAGTAGCGGGGCTAGCAGTGAGATCGATGCAAACAAACGGAAAATGT
TGCCAGCTTGATAGAGAGGGCCTGAGAAAATGGAGCGGGAAAGCAGCGCA
CTAGAGCGCCAGCAATCCTCCATGACCACGCCAGAATGTTGGAGGTCCAC
CATGTTAGCAGTATCAGCCAAACCTACCCACCTGGTTATCTTTGAACATC
CCGACGTGGCTAGCGACACGCAAAATTCATTGACTGCCTTGTGGAGGGCC
GTGGGAAATA
UFO06906.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:50:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31211-RC | 2899 | CG31211-RC | 126..1234 | 9..1104 | 4935 | 97.5 | Plus |
| CG31211-RB | 2927 | CG31211-RB | 126..1234 | 9..1104 | 4935 | 97.5 | Plus |
| CG31211-RA | 2870 | CG31211-RA | 126..1234 | 9..1104 | 4935 | 97.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:50:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 11949805..11950354 | 9..558 | 2750 | 100 | Plus |
| 3R | 32079331 | 3R | 11950426..11950778 | 558..910 | 1765 | 100 | Plus |
| 3R | 32079331 | 3R | 11950856..11950932 | 913..985 | 205 | 93.5 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:50:58 has no hits.
UFO06906.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:19:29 Download gff for
UFO06906.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31211-RC | 117..1220 | 1..1089 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:52:49 Download gff for
UFO06906.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31211-RA | 117..1220 | 1..1089 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:31:01 Download gff for
UFO06906.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31211-RA | 117..1220 | 1..1089 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:31:01 Download gff for
UFO06906.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 11949796..11950354 | 1..558 | 99 | -> | Plus |
| 3R | 11950427..11950784 | 559..914 | 99 | -> | Plus |
| 3R | 11950858..11950932 | 915..985 | 94 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:52:49 Download gff for
UFO06906.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 7775518..7776076 | 1..558 | 99 | -> | Plus |
| arm_3R | 7776149..7776506 | 559..914 | 99 | -> | Plus |
| arm_3R | 7776580..7776654 | 915..985 | 94 | == | Plus |
