UFO06907.5prime Sequence
1130 bp (1009 high quality bases) assembled on 2009-08-31
> UFO06907.5prime
CAGTCGACATGGCCACCAGCGGTATTGTCGAGTCATTTCCCACGGGCGCA
CTGGTGCCCAAGGCGGAGACGGGAGTCCTGAACTTTCTGCAGAAGTACCC
GGAGTACGATGGACGCGACGTCACCATAGCCATCTTCGATTCCGGCGTCG
ATCCCCGGGCAACGGGACTGGAGACGCTGTGCGATGGAAAGACCGTTAAA
GTAATAGAGCGGTACGACTGTTCCGGATGCGGCGACGTGGACATGAAGAA
GAAGGTGACGCCGGACGAGAACGGCAACATTAAGGGCCTGTCCGGAAACT
CGCTCAAGCTGAGTCCGGAGCTGATGGCTCTGAACACAGATCCGGAGAAG
GCGGTGCGGGTAGGCCTCAAGAGCTTCAGCGATTTGTTGCCCTCCAAGGT
GCGGAACAACATTGTGGCCCAGGCCAAGCTGAAGCACTGGGACAAGCCGC
ACAAGACGGCCACTGCAAACGCCAGTCGCAAGATTGTTGAATTTGAGTCA
CAAAATCCAGGAGAAGCCTCAAAACTGCCCTGGGACAAGAAGATATTGAA
AGAGAATCTAGACTTTGAGCTAGAGATGTTGAATAGCTACGAGAAGGTGT
ACGGCGACATTAAGACCTCCTACGATTGCATCCTTTTTCCCACGGCCGAC
GGATGGCTGACAATCGTCGACACCACGGAGCAGGGCGATCTGGATCAGGC
TCTGCGCATTGGCGAGTATTCCCGCACGCACGAGACCCGCAATGTGGACG
ACTTTCTTTCCATATCGGTAAACGTCCACGACGAGGGCAACGTACTGGAG
GTGGTCGGCATGAGCTCACCCCACGGCACCCACGTATCGTCTATTGCCAG
CGGCAACCATAGCTCCCGGGACGTGATGGCGTGCGCCGAATGCTAAGATC
GTTTCTATGACCATCGGTGATGGTCGACTTGGGTCTATGGAGACCGGCAC
GGCACTAGTGCGTGCCATGACTAAGTGATGGACTATGTCGCGATGGCAGA
CGCATCGATGTGATCAACATGAGCTATGGCGAGCATGCATTGGTCAAATT
CCGGCCGCATGGGGGAGCTCATGACGAGTTGTCACAAGTATGGGCGTGGG
GTGGGGTGGCATCGGCGGCACATGGTCGGC
UFO06907.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:50:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| TppII-RF | 4375 | CG3991-RF | 202..1330 | 9..1127 | 5295 | 98.6 | Plus |
| TppII-RA | 4287 | CG3991-RA | 114..1242 | 9..1127 | 5295 | 98.6 | Plus |
| TppII-RD | 4641 | CG3991-RD | 468..1596 | 9..1127 | 5295 | 98.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:50:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 13156887..13157439 | 1054..508 | 2500 | 98.9 | Minus |
| 2R | 25286936 | 2R | 13157495..13157834 | 511..172 | 1700 | 100 | Minus |
| 2R | 25286936 | 2R | 13158020..13158184 | 173..9 | 825 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:50:50 has no hits.
UFO06907.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:19:19 Download gff for
UFO06907.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| TppII-RA | 117..1253 | 1..1130 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:52:44 Download gff for
UFO06907.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| TppII-RD | 464..1600 | 1..1130 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:30:57 Download gff for
UFO06907.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| TppII-RD | 464..1600 | 1..1130 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:30:57 Download gff for
UFO06907.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 13156887..13157436 | 511..1054 | 98 | <- | Minus |
| 2R | 13157496..13157832 | 174..510 | 100 | <- | Minus |
| 2R | 13158020..13158188 | 1..173 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:52:44 Download gff for
UFO06907.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 9044392..9044941 | 511..1054 | 98 | <- | Minus |
| arm_2R | 9045001..9045337 | 174..510 | 100 | <- | Minus |
| arm_2R | 9045525..9045693 | 1..173 | 97 | | Minus |
