UFO06911.5prime Sequence
1088 bp (981 high quality bases) assembled on 2009-08-31
> UFO06911.5prime
CAGTCGACATGGATGGTTCAAAGAAAACGCTGCTCATTAAAATAAGCGCG
AACGGCACTTCGCATTTCTACACTCCGGTGGCGGGCTATCCTGGCCCAGG
ACCTGCGGGCAATGGTCCACCACACTATCACTTGCCGCCACCACCGCCGC
CGCAACAGCAGCAGCAGCAGCCACCACAACAACCACAGCAGCAGGCGCCA
CAAGGACCACCACCGCCACAGCAACAACAACAACAGCAGCAGCAGGTGGC
ACCACCTGCGGTCCAAGGAGCACCAAGCACTGGAAGTGTAGGAGCTGCCC
AAGGAGCACCAGCCACTGCGACAGCCACCCATACACACGCCCATTCGCAC
TCCCACTCACACGCCCACTCGCACACACATCCCCAGCCACATGCACATTC
CCCGCACTCGCCATCGCCGCCCAATTATCGGGATGAACGCAGCCAGCGGC
AGCACAACAAGCTGCTCCGGAAGCTGGAGAAGCAGCGGGAGTCAAATCCC
CCGCATTCGCCATCTCCACGTCGTGCCAACGAACTGAATGGTCACAATAA
TAACAACATTCCTCCGGGTGTGCCCCTGCCCGGTCACCTCAATAACCACC
ATCATGCAGTGAACCATCAAGGACGTCGCCTGCCGCAGCAGCACCAAGGG
CAGGCCCATCAGGTGGCACAGCAGCAACAGTCGCAGGCCAGGAACGGGAA
TCCGCAGCATCCCCAGAGAGCCGGCAGCAGTGTGGGTGGCGCCAGCTCCG
TGGGAACTTCCGAGGATGGCGAGGATAACTCCAGTCTGGCCGGCGATGAT
GAGGAGGAGTACCATCGCGAGAACAGCATCATTGAGCAAATCTCAGCTAT
TGAAAAACCTGAGGTAATCGATGTGACTTCGCGGGCGGCCAAGATAATTT
TGGAGAGTCCAGCCATTGCGAATACAGTGACGTGGATATGCGGCAGCTCC
GGTACCAAGTGCTCCTCTGTGATTCTGGAAGCAATGCAAGTACAAGAGCT
TGTACCAAGGCGAGCCTACGATGCATTGTGTGCAGACTGCAGCCGGTCAG
AAAACCTAGTCCGCTGCAGGTGCCTACCAAATCTTACG
UFO06911.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:37:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG42389-RG | 4759 | CG42389-RG | 301..1381 | 9..1081 | 5070 | 98.5 | Plus |
| CG42389-RH | 7708 | CG42389-RH | 2060..3107 | 42..1081 | 4905 | 98.5 | Plus |
| CG42389-RF | 6365 | CG42389-RF | 1923..2970 | 42..1081 | 4905 | 98.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:37:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 16658024..16658544 | 496..1014 | 2475 | 99.2 | Plus |
| 2L | 23513712 | 2L | 16657499..16657952 | 42..495 | 2270 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 20:37:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6726..6858 | 595..729 | 145 | 62 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1057..1144 | 596..686 | 141 | 64.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2306..2390 | 632..716 | 137 | 65.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6812..6913 | 630..730 | 129 | 62.5 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1082..1132 | 636..686 | 120 | 70.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6777..6883 | 613..716 | 113 | 58.9 | Plus |
UFO06911.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:21:34 Download gff for
UFO06911.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42389-RG | 281..1371 | 6..1088 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:32:25 Download gff for
UFO06911.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42389-RG | 299..1389 | 6..1088 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:23:11 Download gff for
UFO06911.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42389-RG | 299..1389 | 6..1088 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:23:11 Download gff for
UFO06911.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 16657395..16657429 | 6..41 | 97 | -> | Plus |
| 2L | 16657499..16657952 | 42..495 | 100 | -> | Plus |
| 2L | 16658024..16658552 | 496..1022 | 98 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:32:25 Download gff for
UFO06911.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 16657395..16657429 | 6..41 | 97 | -> | Plus |
| arm_2L | 16657499..16657952 | 42..495 | 100 | -> | Plus |
| arm_2L | 16658024..16658552 | 496..1022 | 98 | -> | Plus |
