UFO06912.5prime Sequence
1073 bp (971 high quality bases) assembled on 2009-08-31
> UFO06912.5prime
CAGTCGACATGGAGCCCCCAGCTGCTGGCAATCTGCTGGAGATCATGGAC
CTGGCCCGCACTCTCCGCCAGGAGCAGCTCTTCATCCAGCAGGAGCAGGC
GGCCTTTGCCCAGCTCACTGGAGCCTTTGAGAGCAATGCAGGGACCATAA
CCAAGTTGGCCTTTGTGTGTGCCCAGCAGCGGCAGATACTCAATGAGCTG
CTCCTGGCGCGCACAGATCAGGATCCGCTGCTCTTCTGCCGCCGAGCGAG
TGCCTACGATAGTGCCCAATTCGTGGACGCCAAGCAGTTGCTGCCCTATG
AGCACGCCTTGGCCTACGAAGATCTGTTCAACTACTTGTATAATACACCC
TATTTGTTGGCCCTATCCCTGGCCACCGCGGATCGCTTATCCCTGCTCTC
GGCCAGCCAGCTTGGCCAAATTATTAATACCATAGCGACGGGACTGTATG
GCAATGCCATCAATACCAAGGATGTGGAACTGCTGCTTAAATTGCTGCGG
GAACTGATTGAAATCCAATTGCTGACCAGCGAACAGCCCAGACGTTTGCT
GAGAACCAATAGCAGCTCCTTTGCCCGACTGTATCAGCGATTGGTTGAGA
GTCTGTTCTCGGCGAGAATTTTCCTAACCGCCGCGCTCCATGCGCCGCTC
ATGGGTGTGCTGAGTGAGCACGAGATTTGGCTGGATCTGGATCCGCACAA
ACTAATGCAGACCTTCACGCCCAAAGGAGCGGGAGAAGCGCTTTGGTCGC
GAGGGTGATGAGGAATACCAGCGAAATGTGGCTCGCTTTCATGCGGAGAC
TTTGGGCAAGCTGCACTCCCATGTCCAAGAGTTTGTGAAGAGCTTGCAAC
AGAGTTGGGCGCTATTTCCCAGCTCTCTTAGATGGCTACTCCAAACACTG
AGCCAACAGCTCCGGCAGTCGTTGCGCCACGAGGAGCAGAGATCCGCCAG
CTGCTCACCGACCTGGTGTTCACACACTTCATTTCACAGCATTGCAAGGG
CTGATCTCTGGCATCATCGAATGTTATGTGAGTGACGGAATGCGGCCAAT
CTTTATTCAAATGTTGAATTGCT
UFO06912.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:31:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1657-RA | 5830 | CG1657-RA | 148..1198 | 8..1053 | 4965 | 98.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:31:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 11328474..11329223 | 301..1046 | 3345 | 97.6 | Plus |
| X | 23542271 | X | 11328045..11328196 | 8..159 | 745 | 99.3 | Plus |
| X | 23542271 | X | 11328259..11328407 | 154..302 | 745 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:31:05 has no hits.
UFO06912.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:21:33 Download gff for
UFO06912.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1657-RA | 63..1077 | 1..1011 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:48:13 Download gff for
UFO06912.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1657-RA | 140..1154 | 1..1011 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:09:13 Download gff for
UFO06912.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1657-RA | 140..1154 | 1..1011 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:09:13 Download gff for
UFO06912.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 11328037..11328192 | 1..155 | 97 | -> | Plus |
| X | 11328261..11328407 | 156..302 | 100 | -> | Plus |
| X | 11328476..11329187 | 303..1011 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:48:13 Download gff for
UFO06912.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 11222070..11222225 | 1..155 | 97 | -> | Plus |
| arm_X | 11222294..11222440 | 156..302 | 100 | -> | Plus |
| arm_X | 11222509..11223220 | 303..1011 | 99 | | Plus |
