UFO06915.5prime Sequence
1109 bp (1008 high quality bases) assembled on 2009-08-31
> UFO06915.5prime
CAGTCGACATGGGACGTCGAACGTATTTAAGCCGGTCCTCAACGATTTCC
TACCCCAGCAGAATCGAAGGATGGCTGGATGTCTGCGAAACCGAGGGAGA
ACTAACTCGCCTGATCAAGACGCTTCCCTGGGGTCCTTTATACTGCGTGC
TGCAACAGGACGATCAGACATTCACCGCCTACTGCAGCGAGGAGATTTCG
CTAGGCGATGTTTGCTACGAGGACATTCCAAGGGTTCGGTTGGACCGAGT
TCGTCGTCCTGCGAAGGCTTTGTGGGACGGACCGCCGACGTTGGTCGAGG
AAAACGAGGATTCAGATTCGTGTGTTGGGGGCAGCGGCGGCATGAGTGGC
ATCAACGACATCGTCCTGAATACGACGCTCTACAGTGAACTAGATACGTC
CTATGAGAAGGCGTGCCGCCGTGGATCAGCGCCCACCACGCCCATTTTGG
GCAGCAAACAGCACCAGACGGAGCACAATGCCACCTCGCGTTTCACCAAC
TTCTTTTCCAAGAAATCCAATCCTTTGAAGCGGACCAAGTCGGTGACCAA
GCTGGAGCGGACCAAGCGCGGATCCGGCGGACTGAGGGGCTCCCGCTCGC
ACGAGAGTCTGCTGTCCAGTCACGCCGTCATGTCCACCATAGATCTCTCG
TGCACTGGGGCGGTGGGCGTGGCGCCCGTGCATCAGTCGGTTCTGGGACG
TCGTCACTGTTTCCAGGTACGGGGCGGGCCTCGTGGCGAGCGGTACTACT
CATGCGGATCGCGCCAGGAGCGCGACCTTTGGATCTACTCGCTGCGCAAG
TCGATCGCTCCGAATGCAGAGCACACGCGTCGCACGGACACTCGCTGAAG
GATGTGGGTGTACGAGCGAAAATCTGCCGCCCAAGAAGCGTTACTTTTGC
GACTGCATTGGACAGACGCTGTACGCCGGACTTCGGTGAGCTGCAGACGG
ATCTGCTGTTTTGGGGGGGAGCACTTCGATTTCCCGACTACCGAGATATG
TGATCACTGTTAACGTTTTCGTGAGGTGACAAGAAGAAAAGCCGGACAAT
ACCATTTGTGGATCGGTGAGAAACCCGGCCGATGTCCCTCGATTGCTGCA
CAATGATCC
UFO06915.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:04:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG42684-RH | 6022 | CG42684-RH | 898..1995 | 9..1086 | 4880 | 97.6 | Plus |
| CG42684-RB | 6323 | CG42270-RB | 898..1995 | 9..1086 | 4880 | 97.6 | Plus |
| CG42684-RG | 6028 | CG42684-RG | 1116..2022 | 200..1086 | 3925 | 97.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:04:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 17746965..17747316 | 640..985 | 1275 | 96.6 | Plus |
| X | 23542271 | X | 17721422..17721615 | 200..393 | 970 | 100 | Plus |
| X | 23542271 | X | 17746771..17746898 | 515..642 | 640 | 100 | Plus |
| X | 23542271 | X | 17746569..17746691 | 392..514 | 615 | 100 | Plus |
| X | 23542271 | X | 17720586..17720699 | 87..200 | 570 | 100 | Plus |
| X | 23542271 | X | 17711041..17711119 | 9..87 | 395 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 23:04:34 has no hits.
UFO06915.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:21:32 Download gff for
UFO06915.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42270-RB | 250..1353 | 1..1086 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:11:46 Download gff for
UFO06915.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42684-RB | 892..1995 | 1..1086 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:34:47 Download gff for
UFO06915.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42684-RB | 892..1995 | 1..1086 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:34:47 Download gff for
UFO06915.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 17720587..17720699 | 88..200 | 100 | -> | Plus |
| X | 17721423..17721615 | 201..393 | 100 | -> | Plus |
| X | 17746571..17746691 | 394..514 | 100 | -> | Plus |
| X | 17746771..17746898 | 515..642 | 100 | -> | Plus |
| X | 17711035..17711119 | 1..87 | 95 | -> | Plus |
| X | 17746968..17747373 | 643..1036 | 95 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:11:46 Download gff for
UFO06915.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 17605068..17605152 | 1..87 | 95 | -> | Plus |
| arm_X | 17614620..17614732 | 88..200 | 100 | -> | Plus |
| arm_X | 17615456..17615648 | 201..393 | 100 | -> | Plus |
| arm_X | 17640604..17640724 | 394..514 | 100 | -> | Plus |
| arm_X | 17640804..17640931 | 515..642 | 100 | -> | Plus |
| arm_X | 17641001..17641406 | 643..1036 | 95 | -> | Plus |
