UFO06916.5prime Sequence
1103 bp (942 high quality bases) assembled on 2009-08-31
> UFO06916.5prime
CAGTCGACATGACGCAACCACTGCCCATCCGCTTTCAGGAGCATTTACAG
CTCACAAATGTCGGGATCAACGCCAATTCATTTTCATTCAGCACGCTCAC
GATGGAATCGGATAAGTTTATTTGCGTGCGGGAGAAGGTGAATGATACCG
CCCAAGTGGTCATCATTGACATGAACGATGCCACCAATCCCACGCGGCGT
CCCATCTCAGCGGATTCGGCTATCATGAATCCAGCTAGCAAGGTCATTGC
GCTCAAAGCGCAAAAGACGTTGCAGATCTTCAACATTGAGATGAAGTCGA
AGATGAAGGCGCATACCATGAACGAGGATGTGGTGTTCTGGAAGTGGATC
TCCCTCAATACGCTAGCTCTGGTCACAGAAACGAGTGTGTTCCATTGGTC
CATGGAGGGCGATTCGATGCCGCAAAAGATGTTTGACCGGCATTCATCGC
TGAACGGTTGTCAAATCATCAACTACCGCTGCAATGCCTCCCAGCAGTGG
CTACTCTTGGTCGGCATTTCGGCACTGCCAAGTCGCGTTGCCGGTGCCAT
GCAGTTGTATTCGGTGGAGCGTAAGGTGTCCCAGGCGATCGAGGGGCATG
CGGCCAGTTTTGCCACGTTTAAAATCGATGCCAACAAGGAGCCGACCACG
CTGTTCTGCTTTGCAGTTCGTACGGCCACTGGGGGCAAGCTTCATATTAT
CGAAGTTGGTGCTCCGCCGAACGGCAATCAGCCGTTTGCCAAGAAGCTGT
CGATGTCTTCTTTCCGCCGGAAGCACAAAATGATTTCCCTGTGGCTATGC
AAGTCTCTGCCAAGTACGACACCATCTACTTGATAACCAAGTATGGATAC
ATACATCTGTATGACATGGAGACGGCCACGTGCATATACATGAATCGATT
CGCGTCGTCTGTACGCCGATGAGCATGTGCTCATGCTCATCGAGACGTCT
CCTGACGCACAGACGTCTCTATCACCGTCGATCGATGCTCATGCTGCAAT
GCTGGCAATCTTGCATCAAGCTACGCAAGGACGTATGGCTGACAGCTCGA
CAAAACGTCAGACCTGTCATCCCGCATGATCCAGATATATCATGCCTGGA
ACT
UFO06916.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:18:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Chc-RG | 5788 | CG9012-RG | 466..1355 | 9..897 | 4425 | 99.9 | Plus |
| Chc-RF | 5577 | CG9012-RF | 255..1144 | 9..897 | 4425 | 99.9 | Plus |
| Chc-RE | 5683 | CG9012-RE | 361..1250 | 9..897 | 4425 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:18:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 15832614..15833255 | 897..257 | 3160 | 99.8 | Minus |
| X | 23542271 | X | 15833492..15833703 | 258..47 | 1060 | 100 | Minus |
| X | 23542271 | X | 15834123..15834164 | 50..9 | 210 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 23:18:43 has no hits.
UFO06916.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:21:31 Download gff for
UFO06916.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Chc-RC | 388..1296 | 1..907 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:55:45 Download gff for
UFO06916.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Chc-RE | 353..1261 | 1..907 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:56:54 Download gff for
UFO06916.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Chc-RE | 353..1261 | 1..907 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:56:54 Download gff for
UFO06916.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 15832603..15833253 | 259..907 | 99 | <- | Minus |
| X | 15833492..15833699 | 51..258 | 100 | <- | Minus |
| X | 15834123..15834171 | 1..50 | 92 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:55:45 Download gff for
UFO06916.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 15726636..15727286 | 259..907 | 99 | <- | Minus |
| arm_X | 15727525..15727732 | 51..258 | 100 | <- | Minus |
| arm_X | 15728156..15728204 | 1..50 | 92 | | Minus |
