UFO06918.5prime Sequence
1089 bp (971 high quality bases) assembled on 2009-08-31
> UFO06918.5prime
CAGTCGACATGCCGAAGATTTTCCTGATCAAAAATCGCCTGCATCAGCAG
CAACAGCGCTTGCTTGAATCGCAAAACTTGCTGCAGCACAAGAATCAGGA
TGATGAGCGCTTGGTGCCGCCCCTCAGTCCAAGTGGGAGTGGTAGCGGCC
CCTCGCCAACGCCCACATCCCAACCACCACCGGAACCGCAAGGTCAGGGG
CAACAGGTGCTCGGACAGGTGCCCGATTCAGATCAACAGCCACTGAGCCT
CACGCGCAAACGATTCCACCATCGTCGTCACTACTTCGGACAATCGCGCC
ACAGTCTCGATCATCTCAATCAAAATCAGAGCCCGAATCCAAATGCAAAT
GCAAATCCCAATCAAATACAAAATCCTGCGGAATTGGAAGTCGAATGCGC
CACTGGCCAAGTTCAAAATGAAAACTTTGCCGCCGAGTTGCTGCAGCGTT
TGACACCAAACACTGCCACCACTGCACAAAATAATATTGTTAACAATTTG
GTTAATAATAGCAGAGCCGCCACCTCCGTTTTAGCCACTAAAGACTGTAC
AATTGAAAATTCCCCAATTAGCATACCAAAAAATCAGCGAGCAGAGGACG
AGGAGGAGCAAGAAGACCAGGAAAAAGAGAAGCCCGCAGAGCGGGAGAGA
GAGAAGTCCGATGAGAGGACAGAACAGGTAGAAAAGGAGGAGCGGGTGGA
GCGCGAAGAGGAGGAGGACGACGAGGTGGATGTCGGCGTAGAGGCGCCAC
GCCCACGATTCTATAATACCGGCGTGGTCTTAACCCAGGCCCAACGCAAG
GAGTATCCCCAAGAGCCCAAGGACTTATCCCTAACCATCGCCAAATCCTC
GCCAGCTTCACCGCATATCCACAGTGACTCCGAATCCGATTCGGACTCTG
ATGGGGGCTGCAAGCTAATTGTGGACGAGAGCCACCATTGCGTGATCAAT
CATGTCCTGCGCTGCCAGCAACCGCCACGGCGATCACGACAGTCGCGCCT
CCGCGAGATCCCGCGCCGCTGTCCGCTGCTCGGGATCACGGGCGCGCATC
ATGCCACAGCCGGCTGCTCATGCCCTGATCGCTAGACGA
UFO06918.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:29:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ovo-RE | 6763 | CG6824-RE | 858..1915 | 8..1045 | 4805 | 98 | Plus |
| ovo-RB | 6606 | CG6824-RB | 858..1915 | 8..1045 | 4805 | 98 | Plus |
| ovo-RD | 5948 | CG6824-RD | 78..723 | 420..1045 | 2745 | 96.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:29:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 5064452..5064974 | 420..941 | 2565 | 99.8 | Plus |
| X | 23542271 | X | 5049130..5049542 | 8..420 | 2065 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:29:34 has no hits.
UFO06918.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:21:29 Download gff for
UFO06918.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ovo-RB | 826..1756 | 1..930 | 99 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:43:55 Download gff for
UFO06918.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ovo-RB | 850..1780 | 1..930 | 99 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:03:19 Download gff for
UFO06918.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ovo-RB | 850..1780 | 1..930 | 99 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:03:19 Download gff for
UFO06918.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 5049122..5049542 | 1..420 | 99 | -> | Plus |
| X | 5064453..5064962 | 421..930 | 100 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:43:55 Download gff for
UFO06918.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 4943155..4943575 | 1..420 | 99 | -> | Plus |
| arm_X | 4958486..4958995 | 421..930 | 100 | == | Plus |
