UFO06919.5prime Sequence
1143 bp (994 high quality bases) assembled on 2009-08-31
> UFO06919.5prime
CAGTCGACATGACAATTACGTACACAGGTGAAGTGGCCACTTGTCGCGGC
TTTGGCTGTTTTCTCAAATTGCTGCTCAGATGGCGAGGAAGCATTTACAA
ACTGGTTTGGCTAGATCTTCTGGCCTTCTTGACCATTTACTATGCGATCA
ACATGGTGTATCGCTTTGGCCTCAACCCCGCACAAAAAGAAACCTTTGAG
GCCATTGTTCAGTACTGTGATAGTTACAGAGAACTCATACCCCTGTCCTT
CGTGCTTGGTTTCTATGTATCGATTGTGATGACCCGTTGGTGGAATCAGT
ACACCTCCATTCCCTGGCCAGATCCCATCGCCGTGTTTGTCAGCTCGAAT
GTCCATGGCCAGGATGAGCGAGGACGCATGATGAGGCGAACAATAATGCG
ATATGTGTGCCTTTGCCTGACGATGGTCCTGGCGAATGTTTCGCCGAGGG
TGAAGAAGCGTTTCCCCGGCCTAAATAATCTGGTGGAAGCGGGTCTGCTA
AATGACAATGAAAAGACCATCATCGAGACCATGAACAAGGCCTTTCCCAG
ACCTTCGAAGCACTGGCTGCCCATCGTTTGGGCTGCCAGTATTATAACCA
GGGCCAGAAAGGAAGGTCGCATTCGTGATGATTTTGCTGTGAAGACCATC
ATCGATGAGCTAAATAAGTTTCGTGGTCAGTGTGGACTCCTCATCAGCTA
CGATACCATTAGTGTACCTCTGGTGTACACCCAAGTGGTGACCCTGGCGG
TGTATTCGTACTTCCTTACCTGCTGCATGGGTCAACAATGGACCGATGGC
AAGGTGGTGGGCAATACCACATACCTGAACAAGTGGATCTATACTTTCCT
GTATTTACAACGCTGCAGTTCTTCTTTCTACATGGGTTGGCTCAAGGTGG
CCGAGTCGCTGATAAATCCATTTGGCGAAGACGATGATGATTTTGAGGTC
ACTGGGATGGGGGGATCGCAATCCTCAGTGGCCTTTCTGATCGTCCACGA
AATGCACCATGACCATCCGGAGCTGTTTAAAGGATCAGTACTGGGACGAG
GTGTTTCCCCACCGAGCTGCCCTACACAATAGCTGCGACGATTCGGGGAT
CTATCAAACCGTCACGCCAGATCGAGGTGCCAGATGGCGGCAT
UFO06919.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:18:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Best1-RD | 2930 | CG6264-RD | 439..1529 | 9..1099 | 5110 | 98.4 | Plus |
| Best1-RC | 3074 | CG6264-RC | 439..1529 | 9..1099 | 5110 | 98.4 | Plus |
| Best1-RB | 3269 | CG6264-RB | 439..1529 | 9..1099 | 5110 | 98.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:18:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 10165017..10165775 | 949..191 | 3700 | 99.7 | Minus |
| 3R | 32079331 | 3R | 10166124..10166238 | 190..76 | 575 | 100 | Minus |
| 3R | 32079331 | 3R | 10164825..10164947 | 1086..963 | 385 | 92.8 | Minus |
| 3R | 32079331 | 3R | 10167249..10167319 | 79..9 | 355 | 100 | Minus |
| 3L | 28110227 | 3L | 15301956..15302059 | 667..564 | 220 | 80.8 | Minus |
| 3L | 28110227 | 3L | 15299964..15300034 | 879..949 | 205 | 85.9 | Plus |
| 3L | 28110227 | 3L | 6250646..6250712 | 941..875 | 185 | 85.1 | Minus |
Blast to na_te.dros performed on 2014-11-28 23:18:34 has no hits.
UFO06919.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:21:29 Download gff for
UFO06919.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Best1-RB | 437..1578 | 9..1141 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:55:39 Download gff for
UFO06919.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Best1-RB | 439..1580 | 9..1141 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:56:49 Download gff for
UFO06919.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Best1-RB | 439..1580 | 9..1141 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:56:49 Download gff for
UFO06919.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 10165019..10165775 | 191..948 | 99 | <- | Minus |
| 3R | 10166124..10166234 | 80..190 | 100 | <- | Minus |
| 3R | 10167249..10167319 | 9..79 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:55:39 Download gff for
UFO06919.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 5992971..5993041 | 9..79 | 100 | | Minus |
| arm_3R | 5990741..5991497 | 191..948 | 99 | <- | Minus |
| arm_3R | 5991846..5991956 | 80..190 | 100 | <- | Minus |
