UFO06920.5prime Sequence
1138 bp (1008 high quality bases) assembled on 2009-08-31
> UFO06920.5prime
CAGTCGACATGAACTCCGTAATATCAGCATTTAAAGGAAAAAAAAATAGC
AATCCATCCTGCAATTCTCCAATGGGATCGGCGAATGGCACTGCTCCGGT
GGAGGCAAAGCCAAACAATTGCTACCAGTACCTGCGCCACATACGCGAAA
TCGATACAAACAACAAGCTCCTTTCTCCCGTCGTGGTTGTTGCAGAGGAG
AGGCCAGTGAGCAAGGCTGGTTCGCCCTCGACAGTGGCGACCATGGCTAC
TGGAGTCGATGTGGTGGATCACTGCCTGCCCACAACGGTACGATTGTCCG
TTACCGAGGCGCTATCCGACTTGAACATGAACGGAAAAGCCGTCGAACCC
CCCGTCACCCCATGCACTTCGGTTGGCGACAATGCCAATCTGGAGGTGGC
TGAAACATGGGCTTGTCCACCGCCACAAGCGACGGATGACGAGGACATAT
CCGAGCACTCGACAGCCGCCTGCACCAGCACAAGTAGCTCCAGCGAGCAC
AGCAACAGCACCGTGGTGCACAGTCCAACTGTGGGGGAGAGCACCTGTGA
CTCCGTGTCCGTCTCGGTAAGCCATCCAAGTCCCAGCGTGAGTCAGAACA
ACACATCGTCCGCCACCGGCCGGATGAGTAGCCCCCACAGCCAGTCGTCG
CTCTCCATAGCCTGCGAGCCGCACTCGGCGTCGACCACCACGCTGTCGTC
GCTGGGATCAGACCTGGGCAATGGAAACGGAAGTACCGTACCCGCGTTTC
TAATGGCCGCCCCCGTCACGCTGCCAATTGGCGGCCAGATGCCCACGATA
AAGTGCCTCCCAGGAGCAAGCTCAGCGGCCAGCACGCCCAAGCACTCGCG
CTACTCTAAGCCTCGTCTCAGCCTGAGCCGCGTGTTTAATCACTCTATGC
CCTCCGTGCACGGCCGACCAAATCTCAGTTTTACGCCAGCTGGAGTTTCT
GGAAGTGTGAATCCGCCGAACGTATTTCCACGCACCAAAGAAAACTTAGC
TTGGATTTTAGATCCATGGGCATACTTCTTTCGCCTGTCTCGCAGGTGAC
AATTATTCACATCATCACACCCAGCACCACCGCATCGCAGCTCGACAGTG
CTTGCACGCAATTCGAGTCGATGTCATCGCCATGCTGA
UFO06920.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:48:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| fwd-RD | 6109 | CG7004-RD | 952..2085 | 9..1132 | 5250 | 98.1 | Plus |
| fwd-RA | 7175 | CG7004-RA | 1185..2318 | 9..1132 | 5250 | 98.1 | Plus |
| fwd-RB | 5586 | CG7004-RB | 429..1562 | 9..1132 | 5250 | 98.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:48:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 313024..314027 | 1011..9 | 4880 | 99.3 | Minus |
| 3L | 28110227 | 3L | 311212..311287 | 1084..1010 | 270 | 93.4 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:48:52 has no hits.
UFO06920.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:21:27 Download gff for
UFO06920.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fwd-RA | 1173..2291 | 1..1114 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:51:39 Download gff for
UFO06920.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fwd-RB | 421..1539 | 1..1114 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:30:07 Download gff for
UFO06920.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fwd-RB | 421..1539 | 1..1114 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:30:07 Download gff for
UFO06920.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 313024..314033 | 1..1011 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:51:39 Download gff for
UFO06920.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 313024..314033 | 1..1011 | 98 | | Minus |
