UFO06921.5prime Sequence
1066 bp (973 high quality bases) assembled on 2009-08-31
> UFO06921.5prime
CAGTCGACATGCGTCTCTTCAAAACGCGCAAATCCACGGATACCTACAGC
ACACTAGCCGCGCAGCAACAGCAACAGCAGCAGCAGCAACAACAACATCA
AGCGGAAGGCAGCAACATTTCCCACAGCAGCAACAGCAGCAGCAACAAGA
GTCACACACCGGCAACATGCAGCAACAGACTGAACAAGAGCATTGTGAGC
AGCACCAGCATATCGTCATCGCTGCCTGATCTGCATGACAAGTCGCCCGT
CATGATCCTCAGCTGCACCACCCTGGCCAGCAATGGAGCCACCGCCACGG
CAGCGGTCACAGCAACAGCCACCGGCACAGCAGCAACATCTGGCGGCTCG
CTGCAGCAGCAACAACAGCAGCATCTGCAACACCAGCAGCAGCAGCAGCC
GTTACGCACGGCCACGCCCACGTGTCTGCTGAGTGGCCGTCAGACGCCAT
CGGCCATATCGGTGATGTCGCTCCAAGAGGCCACCAGTCTGCACCGCCAG
CAACAGCAGCCACACCAGCCACCCACCATCTACGTGCCGGTGCCTACGAA
ACTTGGCAACAATGTCAACACTGGCAACAGCTCGGCCACTCTGCTGCTCA
GCTATGGCAGCACCAGCAGCATCGCCAACCTGCAACAGCAGCAGCAGCAG
CATGCCGCCCAGTACCAGCAGTATGTTGCACAGCGGCTGCACGCCGCTTC
CAGCAGTTGTTTGTACGAGAAGGGGTCGAATGCCAGCGGTGGGGCGAGCA
GCAACAAAAGCAGTCTATCCCTGACCCCAAATGGTCACTTGCCCGACTAC
AAGTTGGTGACAGCGATGCCAGTTGTTGTCCTGGACGATGACACAAATCC
AATTCATTGCCGGCCACTGAAGCGAGTCGCAACAGCAACAGCAGCAGCAA
CATGAACGGCAGCAGCAACAGCAACAGCCTTGACGTCAGCAACAGCACTC
GCATTCGGGGAGCTCCACTTCTTTGCAGCACACGAGAAATGTTTCACCTG
GGCAGCGCATGATCGCAAACTGATTGCTGAGCGAATGATGCGCGCGCAAA
ATCGCATTCGATGAGG
UFO06921.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:26:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| a-RD | 3897 | CG6741-RD | 327..1349 | 9..1022 | 4900 | 99.1 | Plus |
| a-RA | 4847 | CG6741-RA | 551..1573 | 9..1022 | 4900 | 99.1 | Plus |
| a-RC | 4665 | CG6741-RC | 369..1391 | 9..1022 | 4900 | 99.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:26:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 22162920..22163696 | 9..785 | 3885 | 100 | Plus |
| 2R | 25286936 | 2R | 22164776..22164970 | 783..975 | 875 | 99 | Plus |
| 2L | 23513712 | 2L | 14062188..14062238 | 8..58 | 195 | 92.2 | Plus |
Blast to na_te.dros performed 2014-11-28 19:26:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2186..2469 | 123..405 | 218 | 59.7 | Plus |
UFO06921.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:21:26 Download gff for
UFO06921.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| a-RA | 522..1564 | 1..1033 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:20:13 Download gff for
UFO06921.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| a-RC | 363..1405 | 1..1033 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:58:18 Download gff for
UFO06921.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| a-RC | 363..1405 | 1..1033 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:58:18 Download gff for
UFO06921.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 22162914..22163694 | 1..783 | 99 | -> | Plus |
| 2R | 22164777..22164970 | 784..975 | 98 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:20:13 Download gff for
UFO06921.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 18050419..18051199 | 1..783 | 99 | -> | Plus |
| arm_2R | 18052282..18052475 | 784..975 | 98 | == | Plus |
