UFO06925.5prime Sequence
1125 bp (1031 high quality bases) assembled on 2009-08-31
> UFO06925.5prime
CAGTCGACATGGAAACTAGACAACCCAGTTCCGGTGATGATCTAAAGCCA
GAGCTGTACTTCCTCATTTCCAAGTTCCTGGCCGCGGGACCGCTGGAGGA
GACGGCGAAGGTCTTGATCCGGGAACTCGAAGAGAAGAAGGTTTTGCCGC
GTCGTCTCGATTGGCAGGGAAACGAGCATGAGCAGACCTTTGAGGAATTG
GAACGAAAGTACAAGCACATTGGCGCCAATCACTTGCTTGAAATATGCAG
TCGTCTGGGTCCACTGGTGGATCGCGAGCTTCCGCCCAGTGTTCCGGGCA
TCAACTCGCTGTTGGGTACTGGGCGCCAGAACCTCCTGCGCACCAAGGAA
ACCGTCTACTGCCATCGCTCCTTAAGGGACTACTGCACCCGCCTGAATGG
AGTCTCGCTGCCGGATTCGGTCCTTACAAAGCCGACCCACAACTTAGATC
GCGTTCTAACTGGACGGGAACACGGCGGGGAAGTCCGTCGCAAGCTCCTC
GTGCCCACGGACCTCTACCGCCGAACAAAATTGCTCCGTCGCACTGTGGG
CCACCTGTCCTCAGTGTACTGTGTTCTGTTTGATCGCACAGGAAGATACA
TCATCACCGGAGCCGATGATCTACTTATTAAGATATGGTCAGCGGCAGAT
GGCCGCCTGCTGGCCACTCTGCGAGGCGCCTCATCCGAGATTACAGACAT
AGCCATTAACTTGGACAATACGATGCTGGCTGCCGGGTCATTGGATCACA
TACTAAGAGTGTGGGACATGCAAACCACATCACCCATCGCCGTACTGTCT
GCTCACACGGGCATGATAACTTCGGTTAACTTTTGTCCGTCGCCACGTAG
CGATCTGAAATATCTGGTGACTACCAGCACAGATGGATCGATCGCCTTCT
GGCAATACTCAACGCCGCGCGGGCAAAAGATCACGTTTGCCCCGAAGCCA
ACGCAGTATCATGAGAACTGCGCCCGGACAGCTCAGATGATGTGTACCAC
CTTTCGCCAGAGCATTTTGCCTGTTGCATCCATGGCGTCTATGATGCAGA
CGTCACGATTGACGACTACATGCTGACTCATGTCTCGATGATTACGACGC
GCACACTGACTGACCATGATCCATT
UFO06925.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:04:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| BRWD3-RA | 7244 | CG31132-RA | 116..1121 | 9..1010 | 4930 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:04:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 24320974..24321535 | 446..1004 | 2660 | 99.5 | Plus |
| 3R | 32079331 | 3R | 24320667..24320914 | 200..447 | 1240 | 100 | Plus |
| 3R | 32079331 | 3R | 24319406..24319469 | 49..112 | 320 | 100 | Plus |
| 3R | 32079331 | 3R | 24320015..24320077 | 139..201 | 315 | 100 | Plus |
| 3R | 32079331 | 3R | 24319115..24319157 | 9..51 | 215 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:04:41 has no hits.
UFO06925.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:21:24 Download gff for
UFO06925.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| BRWD3-RA | 97..1116 | 9..1023 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:38:32 Download gff for
UFO06925.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| BRWD3-RA | 116..1135 | 9..1023 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:53:30 Download gff for
UFO06925.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| BRWD3-RA | 116..1135 | 9..1023 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:53:30 Download gff for
UFO06925.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 24319115..24319157 | 9..51 | 100 | -> | Plus |
| 3R | 24319409..24319467 | 52..110 | 100 | -> | Plus |
| 3R | 24319592..24319621 | 111..140 | 100 | -> | Plus |
| 3R | 24320017..24320076 | 141..200 | 100 | -> | Plus |
| 3R | 24320668..24320914 | 201..447 | 100 | -> | Plus |
| 3R | 24320976..24321535 | 448..1004 | 99 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:38:32 Download gff for
UFO06925.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 20144837..20144879 | 9..51 | 100 | -> | Plus |
| arm_3R | 20145131..20145189 | 52..110 | 100 | -> | Plus |
| arm_3R | 20145314..20145343 | 111..140 | 100 | -> | Plus |
| arm_3R | 20145739..20145798 | 141..200 | 100 | -> | Plus |
| arm_3R | 20146390..20146636 | 201..447 | 100 | -> | Plus |
| arm_3R | 20146698..20147257 | 448..1004 | 99 | == | Plus |
