UFO06927.5prime Sequence
1127 bp (1030 high quality bases) assembled on 2009-08-31
> UFO06927.5prime
CAGTCGACATGTGCAACGGATGTGGATGCTGTGGACCCTGTAATGAAACA
CCCTGCTGTGGCCCCCACAGTCCGCCATGCGGAGCCCCGTCTCCCATCCC
GTGCTCTCCTGCTCCGGGCATGTGCTGTCCCCCTCTGCCCGAGGGCGGCA
TTCCCGATCCCCGTGTCTGGAACTACTACAACACGCCCCCAACTTATCCA
TGTGGCTTCGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGT
AAGTGGTCATAATCATAATCATAATCATAATCATAATCACAACTAGCCTA
GGAGATCCTGGTCATGACTAGTGCTTGGATTCTCACCAATAAAAAACGCC
CGGCGGCAACCGAGCGTTCTGAACAAATCCAGATGGAGTTCTGAGGTCAT
TACTGGATCTATCAACAGGAGTCCAAGCGAGCTCGATATCAAATTACGCC
CCGCCCTGCCACTCATCGCAGTACTGTTGTAATTCATTAAGCATTCTGCC
GACATGGAAGCCATCACAAACGGCATGATGAACCTGAATCGCCAGCGGCA
TCAGCACCTTGTCGCCTTGCGTATAATATTTGCCCATGGTGAAAACGGGG
GCGAAGAAGTTGTCCATATTGGCCACGTTTAAATCAAAACTGGTGAAACT
CACCCAGGGATTGGCTGAGACGAAAAACATATTCTCAATAAACCCTTTAG
GGAAATAGGCCAGGTTTTCACCGTAACACGCCACATCTTGCGAATATATG
TGTAGAAACTGCCGGAAATCGTCGTGGTATTCACTCCAGAGCGATGAAAA
CGTTTCAGTTTGCTCATGGAAAACGGTGTAACAAGGGTGAACACTATCCC
ATATCACCAGCTCACCGTCTTTCATTGCCATACGAATTCCGGATGAGCAT
TCATCAGCGGGCAAGATGTGAATAAAGGCCGGATAAAACTTGTGCTTATT
TTTTCTTTACGTCTTTAAAAGCCGTAATATCCAGCTGAACGGTCTGGTTA
TAGTACATTGAGCACTGACTGAATGCCTCAATGTTCTTTACGATGCCATT
GGATATATCCACGGGGCTATCCATGATTTTTTCCCATTAGCTCTAGCTCT
GAAGATCATACTTCGTAGCTACTTACG
UFO06927.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:03:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17376-RB | 518 | CG17376-RB | 158..360 | 7..209 | 1015 | 100 | Plus |
| CG17376-RC | 784 | CG17376-RC | 98..294 | 7..203 | 985 | 100 | Plus |
| CG17377-RD | 907 | CG17377-RD | 487..641 | 54..208 | 430 | 85.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:03:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 6800487..6800683 | 203..7 | 985 | 100 | Minus |
| 2L | 23513712 | 2L | 6802059..6802187 | 182..54 | 420 | 88.4 | Minus |
Blast to na_te.dros performed 2014-11-28 23:03:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| transib1 | 2167 | transib1 TRANSIB1 2167bp | 232..299 | 778..845 | 123 | 68.1 | Plus |
UFO06927.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:21:23 Download gff for
UFO06927.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17376-RB | 92..309 | 1..220 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:14:28 Download gff for
UFO06927.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17376-RB | 92..309 | 1..220 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:48:35 Download gff for
UFO06927.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17376-RB | 152..369 | 1..220 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed on 2014-11-28 23:48:35 has no hits.
Sim4 to na_arms.dmel.RELEASE5 performed on 2013-08-05 01:14:28 has no hits.
