UFO06929.5prime Sequence
1144 bp (1030 high quality bases) assembled on 2009-08-31
> UFO06929.5prime
CAGTCGACATGTTGGCCCACTCCGCGCATGTAATGACGTTGGCCAACAGC
ATCATAGGCGTCGGCATCTTGGCCATGCCGTTCTGCTTCCAGAAGTGCGG
CATCCTGTTATCCATCGTTCTTCTTGTGCTAAGCAATGGAATAACCCGGG
TTTGCTGCCACTATCTTATTAAAACCTCGCTGCTGACACGTAGGAGGAGC
TTCGAGATGCTCGGTCTCCATGCTTTCGGTACTTCCGGCAAGCTGCTGGT
GGAGCTGTGCATCATTGGCTACCTGATTGGAACGTGCATCACGTATTTTG
TGGTCGTGGGCGATCTGGGTCCGCAGATAATCGCCAAGATTTTCGCGCTG
GACGTGGCAGATCACCTGCATCTGCGGAGTCTGGTCATGGTCGTAGTCAC
TGTGGTGTGCATAGTGCCCCTCGGCATGCTCCGCAATGTGGACAGCTTGT
CCGCCGTTTGCACCGCGTCCATAGGTTTCTATGTCTGCCTAATTCTCAAG
ATCGTGTTGGAGGCCCAGCCACACATTACGGCCAACGACTGGACGGAAAA
GGTGCTCTACTGGGAACCGGCGGGCGTACTCCAATGCCTACCCATCTTCA
GCATGGCTCTCTCCTGCCAAATGCAACTATTTGAGGTCTTTGAGAGCATT
AACAACCAGAGTCTCGACAAATTAAACGGCATCGTCCGCAATGCCACTTG
GATTTGTACTTTTGTTTACATATCTGTTGGTTTTTTCGGATATGTGGCGT
TTTGTACGCACACCTTTTCGGGCAACATTCTGGTGAACTTATCGACCTCC
TTTGGTAGCGATATCATTAAAATTGGCTTTGTGCTGTCAATTGCTTTTAG
TTTCCCATTGGTAATCTTTCCCTGCAGAGCCAGTCTCTATTCGCTGCTAT
ACAGAAAGGGTCATACGGAAAGCAGTAGCTACATACCTGACAACGCTTTC
GATCATCACTATCTTCATCGTTGTCTTTTCGTATGCGTGGCTTTGTTATT
CCCTCCGTGGAGCTTATAATTGGGCTTGGTGGATCCACCATTGGGCGTAC
CATTTGTTATATGTTCCGCATCAGTTCGAAAATCAATCAAGATCTATGAC
GTACGCTTGCCAGTTGGATCGATGGATTCTATTTGAGATCTGGG
UFO06929.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:03:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG30394-RB | 2959 | CG30394-RB | 343..1405 | 9..1067 | 5065 | 99 | Plus |
| CG30394-RA | 3055 | CG30394-RA | 439..1501 | 9..1067 | 5065 | 99 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:03:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 21322506..21322882 | 385..9 | 1885 | 100 | Minus |
| 2R | 25286936 | 2R | 21322217..21322457 | 623..383 | 1205 | 100 | Minus |
| 2R | 25286936 | 2R | 21322008..21322157 | 772..623 | 750 | 100 | Minus |
| 2R | 25286936 | 2R | 21321811..21321949 | 909..771 | 695 | 100 | Minus |
| 2R | 25286936 | 2R | 21321617..21321758 | 1044..907 | 420 | 93 | Minus |
Blast to na_te.dros performed on 2014-11-28 23:03:32 has no hits.
UFO06929.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:21:21 Download gff for
UFO06929.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30394-RB | 566..1592 | 1..1023 | 99 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:14:26 Download gff for
UFO06929.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30394-RA | 431..1457 | 1..1023 | 99 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:48:33 Download gff for
UFO06929.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30394-RA | 431..1457 | 1..1023 | 99 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:48:33 Download gff for
UFO06929.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 21321812..21321948 | 772..908 | 100 | <- | Minus |
| 2R | 21322009..21322157 | 623..771 | 100 | <- | Minus |
| 2R | 21322218..21322456 | 384..622 | 100 | <- | Minus |
| 2R | 21322508..21322889 | 1..383 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:14:26 Download gff for
UFO06929.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 17209317..17209453 | 772..908 | 100 | <- | Minus |
| arm_2R | 17209514..17209662 | 623..771 | 100 | <- | Minus |
| arm_2R | 17209723..17209961 | 384..622 | 100 | <- | Minus |
| arm_2R | 17210013..17210394 | 1..383 | 98 | | Minus |
