UFO06933.5prime Sequence
1097 bp (971 high quality bases) assembled on 2009-08-31
> UFO06933.5prime
CAGTCGACATGTACGGTGGAGACGAATACGCAACCAACTCGGATTACTAC
GATGACTACGCTCATACCGGAGACCCGCAACTGGACATGGAGTACGAGAG
GAACTACTACGCCGCCCGGATGCCGGACAACGTCAAGTACTTCCTCATAA
ACTTCTGCCAGGCGATCAAAGAGGGCAACTTGTACGACATCCAAAACATG
TACGAGAACACGTTCCCGCAGATCAGCGACCACCACTTCGACAAGACTGC
TTGGCCCGAGGAGCAGGAGGTGGCTGCTATTGTAGACAACGACAAGGTCT
TCCTGATCTTATACAAGGAGTTGTACTATCGCCACATCCACGCCCGCATC
CCCGGTGGTCCCAAGTTGGAGCAGAGGATCAACTCGTTCTTCAACTACTG
CGACTTCTTCAACCTGATCATCTCGGCCCAGAACCCAGTGATGCTGGAGC
TGCCCGACATCTGGCTGTGGGAGTTGGTGGATGAGTTCGTGTATCAGTTC
CAGAACTTCGCGCAGTATCGCGCCCGCCTTACGGAGAAATCGCAGGATGA
GATCCAGCAGCTGTGCGTGAACCACAGCAACGAGTGGAGCATTCTCTGCA
TCCTCAACGTTCTGCATTCCCTTGTGGACATCTCGAACATCAAGAAGCAG
CTGGAGGCCATCTCTCAAGGTGTTGATCCCCAAACCGTGGCCGGTGACTT
CGGCAAACTGTCCTTCTACAAGATGCTGGGATACTTCTCCCTTGTCGGAC
TGCTGCGCGTTCATTCGCTGCTGGGTGACTACTACCAGGCCATCAAGGTG
CTGGAGCCCATTGAGATCCACAAGAAGTCCGCCTATTCGCACATCCCCGC
CTGCAAATCTCGACGTCGTACTACGTGGGCTTCGCCTACATGATGATGCG
CCGCTACGCTGATGCCATCCGCACCTTTTCTGATATCCTCCTGGACATTC
AGCGTACCAGCAGCTGTACAGCACGCGTTCTTACCAAAACGATCAAATCA
ACAAGCAAGGCCGAGCAGAATGTACCATCTTTTGGCCATCTGCCTGGTAC
TCCATCCCATGCATCGACGGTCATCAGCAGTGCTCAGAAAGGAACTA
UFO06933.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:44:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5642-RA | 1834 | CG5642-RA | 110..1206 | 9..1097 | 5160 | 98.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:44:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 12144180..12144718 | 1058..520 | 2475 | 98.9 | Minus |
| 3L | 28110227 | 3L | 12144772..12145251 | 520..41 | 2400 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:44:50 has no hits.
UFO06933.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:19:56 Download gff for
UFO06933.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5642-RA | 120..1204 | 1..1080 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:37:30 Download gff for
UFO06933.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5642-RA | 102..1186 | 1..1080 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:13:40 Download gff for
UFO06933.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5642-RA | 102..1186 | 1..1080 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:13:40 Download gff for
UFO06933.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 12144153..12144717 | 521..1080 | 98 | <- | Minus |
| 3L | 12144772..12145250 | 42..520 | 100 | <- | Minus |
| 3L | 12145956..12145996 | 1..41 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:37:30 Download gff for
UFO06933.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 12137253..12137817 | 521..1080 | 98 | <- | Minus |
| arm_3L | 12137872..12138350 | 42..520 | 100 | <- | Minus |
| arm_3L | 12139056..12139096 | 1..41 | 95 | | Minus |
