UFO06934.5prime Sequence
1117 bp (1002 high quality bases) assembled on 2009-08-31
> UFO06934.5prime
CAGTCGACATGGTCAAGGACATACCAGACAGATGGCTGAAGTACAAACCG
ATTGGAGATCGTGTTCCTGGCACTCGTTTCATAGCCTTTAAGGTGCCGCT
GAATCAGCATGTCAACGCCAAAGTGAAGGAGAATCTTCGGCTGGCGCCCG
AATCCCTTCTGCAGATCGTACCCGATATGGGTCTCATCATCGATTTGACC
AACACGAATCGATACTACCACCCAAGTGCCATAACCAACCACGATGTGCT
CCACCAGAAGCTGATGATCCCCGGAAAACAGACACCCTCGCATAAGCTAG
CCCAAAGATTCTGTGCTTTCGTGACTGACTTCCTTGAAAGGAACGCGGAT
AATGACAAACTAATTGGCGTCCATTGCACACATGGAGTAAATCGAACTGG
ATACCTGATCTGCTACTTCATGATCTCCGTAATGAACATGTCCCCTGAGG
AGGCGATACAAACCTTTTCTTTGGCCCGCGGCCATGAAATCGAACGCGAC
AATTACCTGAGCTCTCTAAAGACACTCCCGAATCGGGAGACCGTAACGAA
GCTTGCTGCCACAGAGAGGAGATCATCCACAATAGATAATTGGCGTCAGC
CAATTGATTACCAAAGCGAAAGAGATTTGCATCAGAAAAACAACCACAGA
CTGTCAAAAGTCTTGAAAACGAAATCCTATCAGGAACACGACGACTGTCG
AAGACGCGACCGCTGGAACCAACATCCTTATGCCCGTAACCATAGACCGC
ATCCAGTCGAAGAACAAAGAAGGATTCAAAGTAACCGATCTAGAGATGGA
TATCAGCAGGCTCGAACCAACATCCTTATTCCCGTAACCATAGACCGCAT
CCAGTCGAAGAGCAATATAGGATTCAAAGTAACCGATCAGGAGGAGGCTA
TCAGCAGGCTCGATAAGCTATCAACAGAACCTCATCAAAGGTATCAAAGA
ACTGGGATTATTCGAGAAGAACTATAGCGAAGAAACTACAGTGAAGAACT
GGGAGCGAAAGAAACTACAGCGATCAAGCAGCTTTCTAGAACAATTTGTT
TGGCGCGCGGCCCAGTTAATGGTCTAATCATAATCCAATCCTAATCCAAT
CCAACTAGGCCTAGAGA
UFO06934.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:44:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13197-RB | 3613 | CG13197-RB | 106..1131 | 9..1027 | 4910 | 99.1 | Plus |
| CG13197-RA | 1274 | CG13197-RA | 106..1131 | 9..1027 | 4910 | 99.1 | Plus |
| CG13197-RB | 3613 | CG13197-RB | 809..913 | 810..913 | 335 | 88.6 | Plus |
| CG13197-RB | 3613 | CG13197-RB | 908..1012 | 712..815 | 335 | 88.6 | Plus |
| CG13197-RA | 1274 | CG13197-RA | 809..913 | 810..913 | 335 | 88.6 | Plus |
| CG13197-RA | 1274 | CG13197-RA | 908..1012 | 712..815 | 335 | 88.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:44:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 11694918..11695303 | 649..1027 | 1535 | 97.4 | Plus |
| 2R | 25286936 | 2R | 11691965..11692167 | 105..307 | 1015 | 100 | Plus |
| 2R | 25286936 | 2R | 11694655..11694841 | 463..649 | 935 | 100 | Plus |
| 2R | 25286936 | 2R | 11694473..11694581 | 354..462 | 545 | 100 | Plus |
| 2R | 25286936 | 2R | 11691497..11691575 | 29..107 | 395 | 100 | Plus |
| 2R | 25286936 | 2R | 11694981..11695079 | 810..908 | 330 | 88.9 | Plus |
| 2R | 25286936 | 2R | 11695080..11695178 | 712..810 | 330 | 88.9 | Plus |
| 2R | 25286936 | 2R | 11692497..11692545 | 306..354 | 245 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:44:32 has no hits.
UFO06934.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:19:55 Download gff for
UFO06934.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13197-RA | 87..1123 | 1..1031 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:37:23 Download gff for
UFO06934.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13197-RA | 98..1134 | 1..1031 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:13:27 Download gff for
UFO06934.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13197-RA | 98..1134 | 1..1031 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:13:27 Download gff for
UFO06934.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 11691500..11691575 | 32..107 | 100 | -> | Plus |
| 2R | 11691968..11692167 | 108..307 | 100 | -> | Plus |
| 2R | 11692499..11692545 | 308..354 | 100 | -> | Plus |
| 2R | 11694474..11694581 | 355..462 | 100 | -> | Plus |
| 2R | 11694655..11694840 | 463..648 | 100 | -> | Plus |
| 2R | 11694918..11695305 | 649..1030 | 97 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:37:23 Download gff for
UFO06934.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 7581979..7582086 | 355..462 | 100 | -> | Plus |
| arm_2R | 7582160..7582345 | 463..648 | 100 | -> | Plus |
| arm_2R | 7579005..7579080 | 32..107 | 100 | -> | Plus |
| arm_2R | 7579473..7579672 | 108..307 | 100 | -> | Plus |
| arm_2R | 7580004..7580050 | 308..354 | 100 | -> | Plus |
| arm_2R | 7582423..7582810 | 649..1030 | 97 | -> | Plus |
