UFO06936.5prime Sequence
1070 bp (961 high quality bases) assembled on 2009-08-31
> UFO06936.5prime
CAGTCGACATGGCAGCCTCAATGGATGAGGATATAACCGCCAACCCGCCC
CCAAGCAGCGAAGAGGACCCCCTGGCCGAGGAGCGCCTAGGCTTTGTGCG
GGAAGTGGGCGCGCAGGCTGTTTGGAGCCTCTCCTCCTGCAAGCCGGGAT
TTGGTGTAGAGCGTTTGCGAGACAACATCATGGATACTTATTGGCAGTCG
GACGGTCAGCTTCCCCACCTGGTCAACATTCAATTCCACAAGCGTACGAA
CATCAGTCAGATTTACATATACACGGATTACAAGCTGGACGAGAGTTACA
CGCCATCAAGGATCTCCATACGATCTGGAACGAACTTCAACGACTTGCAG
GAGCTGCAGGTGATGGACCTGACCGAACCCACCGGCTGGGTGCAGATACC
CATTAAGGATGGGAACGTCAAGTCCATACGCACCTTCATGCTTCAGATTG
CTGTGATCTCGAACCACCAGAATGGCAGGGACACCCACATGCGCCAGATC
CGCATCCATGCGCCCGTCGAGGGCAAGCACTATCCTCTGGAACTGTTTGG
CAAGTTTGGAACGGTCGACTTTCAGAAGTTCGCCACCATTCGTGCAAGCT
TTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCAT
AATCATAATCATAATCATAATCACAACTAGCCTAGGAGATCCTGGTCATG
ACTAGTGCTTGGATTCTCACCAATAAAAAACGCCCGGCGGCAACCGAGCG
TTCTGAACAAATCCAGATGGAGTTCTGAGGTCATTACTGGATCTATCAAC
AGGAGTCCAAGCGAGCTCGATATCAAATTACGCCCGCCCTGCCACTCATC
GCAGTACTGTTGTAATTCATTAGCATTCTGCCGACATGGAAGCCATCACA
AACGGCATGATGATCTGATCGCAGCGGCATCAGCACTTGTCGCTGCGTAT
ATATTTGCCATGTGAAAACGGGGCGAGAGTTGTCATATGCCACGTTTAAT
CAACTGTGACTCACCAGATGCTGAACGAAAAACATCTCATACCTAGGAAG
GCAGCTTCCGTAACGCCACT
UFO06936.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:49:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| APC10-RA | 867 | CG11419-RA | 78..662 | 9..593 | 2925 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:49:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 17517466..17517912 | 593..147 | 2235 | 100 | Minus |
| 2R | 25286936 | 2R | 17517970..17518109 | 148..9 | 700 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:49:42 has no hits.
UFO06936.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:19:53 Download gff for
UFO06936.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11419-RA | 70..659 | 1..593 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:15:15 Download gff for
UFO06936.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| APC10-RA | 73..662 | 1..593 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:40:13 Download gff for
UFO06936.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| APC10-RA | 73..662 | 1..593 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:40:13 Download gff for
UFO06936.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 17517466..17517911 | 148..593 | 100 | <- | Minus |
| 2R | 17517971..17518114 | 1..147 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:15:15 Download gff for
UFO06936.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 13404971..13405416 | 148..593 | 100 | <- | Minus |
| arm_2R | 13405476..13405619 | 1..147 | 97 | | Minus |
