UFO06938.5prime Sequence
1126 bp (1025 high quality bases) assembled on 2009-08-31
> UFO06938.5prime
CAGTCGAACATGTCAACCACTGCCGATCCCGTGGCGCTGGGGGTAAACTC
CCCCGTGGAGGATGTAGTGGCCAAAACCACCACAACGGTGGCCAATGCGA
TTGCGAAGACAGTGGCCGTAATTAGCAGCACGGTCTCAACTAGCTCCACA
ACTGGCGCCACTTCCACCATTTCAACGAGTAGTAGCACACCCACTACCTC
GACCACTTTCGCCTACACTCCCACGCCCACTCCCACTCAATCAGCATCCC
CATCCCTGGAGGATGGTGAGGAGAAACTCAGCGTGAAGGATTTAAGCCAG
GCCCTGCAGCATTTCGGTATTGTTGATTACTTGGTCTTCATCGCCATGTT
GGCGGTCTGCGCCGTTATCGGCTTCTATTTCGGCTTTATCGAAAAGAAGC
AAAAGAAACAGAAGCTGGCCGGCAAGGACGGCGGTGGGGCGGCGGGCGTC
GAGGAGAGGCGTGGCTCGGAGGCGCTGGACTACCTGGTGGGCGGACGGCA
AATGAAAGTGTTTCCGGTCGCGCTGTCACTTGTGGCCAGCTTCGTGTCTG
GAATCTCGCTTCTGGGAACATCAACGGAAATCTATGTATATGGCACGCAG
TACGCCTTCATTCTGGTGACCCTGGCCATTTCGGGAGCTATTTCGTGGTA
TATATTCCTGCCTGTATTCTGCAATCTCCAGCTGACATCCACCTATGAGT
ACTTTCAATTGCGCTATGGCGCTGGCATACGCAATTTGGGCTCGGTTCTA
TTTATTGTGGGCACGATGCTCTGGCTTCCTGTTGCGCTTTATGTACCGGC
CATCACCTACAATCAAGTGACTGGCACTGGCATCCATGTAATTACGCCCA
TTGTGTGCACTATCTGCACTTTCTACACGTGTGTGGGCGGACTTAAGGCC
GTCGTTTGGACAGATGTCATTCAGAGCTTTGTTATGTTTGGTTCCATTTT
GGCGGTTTGCGTCAAGGGCACCTTCGATGTGGGCGGACTGGGCGTGTTCT
GCACGCAATGAGATGGCGACGTCTTAATGCCCGGGTGACTGGGACCCACA
GTGCGATGTCATGTGTCCGTGATTGGGGCACTCTGCATAGAATCAGTCCT
CGATTCACCAACGTTCCATTCACCGA
UFO06938.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:51:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG42235-RC | 2328 | CG42235-RC | 225..1334 | 10..1102 | 5115 | 98.3 | Plus |
| CG42235-RE | 2500 | CG42235-RE | 225..1160 | 10..945 | 3540 | 92.1 | Plus |
| CG42235-RD | 2389 | CG42235-RD | 225..919 | 10..704 | 3475 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:51:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 25907663..25908192 | 10..539 | 2650 | 100 | Plus |
| 3R | 32079331 | 3R | 25910025..25910186 | 538..699 | 810 | 100 | Plus |
| 3R | 32079331 | 3R | 25915490..25915601 | 885..996 | 560 | 100 | Plus |
| 3R | 32079331 | 3R | 25915358..25915428 | 816..886 | 355 | 100 | Plus |
| 3R | 32079331 | 3R | 25914994..25915061 | 698..765 | 340 | 100 | Plus |
| 3R | 32079331 | 3R | 25915118..25915170 | 765..817 | 265 | 100 | Plus |
| 3R | 32079331 | 3R | 25919305..25919478 | 772..945 | 240 | 75.9 | Plus |
| 3R | 32079331 | 3R | 25913238..25913399 | 835..996 | 195 | 74.7 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:51:33 has no hits.
UFO06938.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:19:51 Download gff for
UFO06938.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42235-RC | 215..1331 | 10..1107 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:53:10 Download gff for
UFO06938.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42235-RC | 215..1331 | 10..1107 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:31:15 Download gff for
UFO06938.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42235-RC | 225..1341 | 10..1107 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:31:15 Download gff for
UFO06938.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 25907663..25908192 | 10..539 | 100 | -> | Plus |
| 3R | 25910027..25910186 | 540..699 | 100 | -> | Plus |
| 3R | 25914996..25915061 | 700..765 | 100 | -> | Plus |
| 3R | 25915119..25915170 | 766..817 | 100 | -> | Plus |
| 3R | 25915360..25915427 | 818..885 | 100 | -> | Plus |
| 3R | 25915491..25915645 | 886..1034 | 96 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:53:10 Download gff for
UFO06938.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 21733385..21733914 | 10..539 | 100 | -> | Plus |
| arm_3R | 21735749..21735908 | 540..699 | 100 | -> | Plus |
| arm_3R | 21740718..21740783 | 700..765 | 100 | -> | Plus |
| arm_3R | 21740841..21740892 | 766..817 | 100 | -> | Plus |
| arm_3R | 21741082..21741149 | 818..885 | 100 | -> | Plus |
| arm_3R | 21741213..21741367 | 886..1034 | 96 | -> | Plus |
