UFO06939.5prime Sequence
1094 bp (988 high quality bases) assembled on 2009-08-31
> UFO06939.5prime
CAGTCGACATGATCCACTGGAGACTTCTTTCCGCCCTACTTGTGGGCCTG
GCTATAGCTTTAACGCTTCCAGTCGACGGGGAGCTCTTGGCCAGATCGCC
GGCCAGCGTCTCGAGTAACCGCTTTGGCCTACGCCTAACTACTAAGTTGG
GACTAACTCAACCAGATGCAAATGTGGTGGTTTCCCCCTTGCTTATACAG
GCGGCGCTCAGCCTGCTGTATGCGGAAAGTTCTTCGGAGTACGGTAGCCA
ACTCCGCCAGGCTCTGGAGCTGACCCACGCCAGTCACCCGAAGCTTGCGG
TGCAGGACTTCGAGACCCTTTTGACGGACCTCAAGCAGTCGGCTGCCATT
GGCTGTCGCTTGCGGTTGCTGAGTGACCTCTACGCACAGCAGCGCTTCAC
CTTCAACTTCCGCAATGAATTCGAGACCTTGGCCGCCCGAATGGGCGTCG
GCTGCCACCGCTTGTCGTGGGAAAGTGCGTCGAACGCGGCCCAGGATATC
AACTACGCCTTCCTTAGCCGCAGCAACTTCAGCCTGGGGGAGCTCGTCAG
TGCCCCCCAACTCGAGTCCTTGGCCGAGCACAACACGCCCTTTTTACACG
TCTCGGGAGTCACCTTCCGAGCCCCTTGGGCTTGGGCCTTCGATCCTACC
GAGACGCAGAGCATCAACTTCTTTGCCGGGGGAAATCGCCCCAGGCTGGT
GGATGCCATGTTCGGACAGCACCGCTACAGGTACGCTGAAGTGCCCGCTC
TGGACGCCCAGCTCATTGAGGTGCCCTTCGCCACTGCAGACCTCCGAATG
CTCATTGTATTTCCCAATCGGCCTGATGGCCTGGCCCAACTTGAGAGGAA
GCTGGCGCAGTCCGATCTCCACCAGCTAAAGTCCCAGCTCGGAGGAGCGC
AAGGTGGTCCTCACTCTGCCCAAGCTCAGAGTGCTAGTCCACTCCGACCT
GAAGCACGTGCTCGAGGAGTTGGGTCTGGCAAAACTATCACAATCGAGTC
CACTGAGCGAGGTCTTTCAGCTCATCTGTCAGTCGCTCCACCTGGGAGCA
GTGATTCAGATTGTCTCTGAGCTAAGAAGATGCGCATGCGACAC
UFO06939.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:24:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Spn43Ad-RA | 1432 | CG1859-RA | 65..1126 | 7..1060 | 4925 | 98.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:24:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 7154399..7155360 | 969..7 | 4735 | 99.7 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:24:38 has no hits.
UFO06939.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:19:50 Download gff for
UFO06939.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Spn43Ad-RA | 59..1093 | 1..1033 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:19:34 Download gff for
UFO06939.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Spn43Ad-RA | 61..1095 | 1..1033 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:57:13 Download gff for
UFO06939.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Spn43Ad-RA | 61..1095 | 1..1033 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:57:13 Download gff for
UFO06939.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 7154399..7155364 | 1..969 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:19:34 Download gff for
UFO06939.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 3041904..3042869 | 1..969 | 99 | | Minus |
