UFO06940.5prime Sequence
1140 bp (998 high quality bases) assembled on 2009-08-31
> UFO06940.5prime
CAGTCGACATGTCGGAGGCTACCATTGAGCTGGACTCGAGCATCGCCGTG
GCACCCAAGTGCTCCAATGTGAACAACAACAATAGTGCCCGCTCCAGTCG
GGTGGGCAGCTCCATCTCCGGACCGGATTCGGATGCGGAGTGCCAGCGAT
TTGGATGGTGCGGCTGGAATCCGGCGTGGCTACAGCGCTTCTGCACCGCC
AAATGGGCTCTTTTCTGGCTCTGCTGGGGCGGTGCTCTCCAAGGTCTCAT
CGTGAACGGCCTGATCAATGTGTCCATCTCCACCATCGAGCGTCGCTTTG
GACTTCGCTCCCGGCAAATGGGACTGGTGGCCAGTGGCTACGATCTGGCC
TCCTTCGCCTGCCTAGTACCAGTTACCTACTACGGCGGACGACGTGGTGC
CTCCAAGCCGCGCTTCATCGCCATCGGACTGATTGTGATGGGCATGGGAT
CGCTGGTCTTCCTGCTGCCCAATTTCCTGGTGGGTAACTACCGGGCCACT
ATTGCCGAGGCCAATGTGTGCGAGACAACGGGATTGCCGTTCAACTCCAA
CTCCAGCCAGTCGATGACCGCTTGCGAACTGAACGCAATGGGGGAGGGGC
AGAGCGAGAATCTGACCTGGACGGTGTGGCTCTTCCTGGCCGCCCAATTG
CTCCACGGTGCCGGAGCATCGCCCCTCTTTACGCTGGGCGTCACATATAT
CGATGAGAACGTCTCAAAGAAGATGTCATCTGTTTACTTGGGCATCTACT
ACACAATGGCCACCGTTGGACCAGCGATTGGCTATGTATTCGGTGGACAA
CTGCTGCTCATCTATACAGATTGGATGACCGTGGATCCCGTTCAACTCAG
CCTGACCAGCGACAGCAGGGTGGGGATTGGAGCCTGGTGGCTGGGCTTCA
TTTTCGCAGCCGCCATGTGTCTGCTCATCGCCTTGCCCATTTTCCGATAA
CCCAAGTTGCTGCCCGGCGCGGAAAAAATTGCAGCTGGAAAGGTTTCGAA
GAACATGCCACCATATCGGAAGCCGGATGACTCCAGTATGTGGTCAGGGA
CTGCCACGTGCGGTGCTCACCTGCTGCTATCCACCTTCTTTTTCTTGAAC
TGACGGTGCACGAAGGACTGGTGATGAACGAATTGCGCCT
UFO06940.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:36:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Oatp26F-RA | 2418 | CG31634-RA | 89..1187 | 8..1100 | 5105 | 98.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:36:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 6628746..6629070 | 566..242 | 1625 | 100 | Minus |
| 2L | 23513712 | 2L | 6632082..6632319 | 245..8 | 1190 | 100 | Minus |
| 2L | 23513712 | 2L | 6628515..6628691 | 742..566 | 885 | 100 | Minus |
| 2L | 23513712 | 2L | 6626536..6626762 | 1069..845 | 745 | 93.4 | Minus |
| 2L | 23513712 | 2L | 6627501..6627604 | 844..741 | 505 | 99 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:36:48 has no hits.
UFO06940.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:19:49 Download gff for
UFO06940.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Oatp26F-RA | 86..1199 | 8..1112 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:32:14 Download gff for
UFO06940.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Oatp26F-RA | 89..1202 | 8..1112 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:23:02 Download gff for
UFO06940.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Oatp26F-RA | 89..1202 | 8..1112 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:23:02 Download gff for
UFO06940.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 6626486..6626762 | 845..1112 | 91 | <- | Minus |
| 2L | 6627501..6627603 | 742..844 | 99 | <- | Minus |
| 2L | 6628516..6628690 | 567..741 | 100 | <- | Minus |
| 2L | 6628746..6629068 | 244..566 | 100 | <- | Minus |
| 2L | 6632084..6632319 | 8..243 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:32:14 Download gff for
UFO06940.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 6626486..6626762 | 845..1112 | 91 | <- | Minus |
| arm_2L | 6627501..6627603 | 742..844 | 99 | <- | Minus |
| arm_2L | 6628516..6628690 | 567..741 | 100 | <- | Minus |
| arm_2L | 6628746..6629068 | 244..566 | 100 | <- | Minus |
| arm_2L | 6632084..6632319 | 8..243 | 100 | | Minus |
