UFO06943.5prime Sequence
1102 bp (971 high quality bases) assembled on 2009-08-31
> UFO06943.5prime
CAGTCGACATGAGTCGCCAGTCGACTTGCAGGCTAGTCCTGCTGCTGGCC
TTTACCCTGGCCCTAATCCACGCCAGCCACTCAAATACCGTGGGCCCCAA
GATCCACTTCATTCATGACGATCTGACGGAAAACGAGCTGAACTCTGGAG
AGGAGGTGAGCCCGACCGAGAGTCTGCCCAAAATCTCCACCCCCAAGGTA
AAGGATTTACCCGTGGAGACGACCACCAGGAGCCCCACAAAAAAAACCAC
GTCCTCCGGCACCGAGAAGTCCCTTAGCGAGGAGGCTTGGAATGATCTGA
TGGAGGCGGCCAAGCACAGCCAAGCTTTGGCTGATGATCCACACTTCAAC
AAGATGCTCAATACTACCGTCGCCGCCGGGGAGAAGAACTCCACCGATAC
CGACGATAGCGAATACTATGACTACGATGATGATTACAACTATTTCGATG
AGGAGACGGTGACGATTTCCCCCAGTCCCAAGAAGGCCAAGAGCAACCCC
AAGCTGCAGCCCATTGTGGATGCCACCATCACGAAGTCCAAGAGCAAATC
CAACGACCAAAAGACCAAAGAGAGTGCTAACGATATCGACAGCGACTCTC
AATATGACTACGACGAGGGTCTGGATGATGATGATGACGAGGACGATGCC
GCTGACGACCTTTTGACCGATGATGAGCAAGTTGTCTTCAGCGAGGACGT
TCCGTGTCCAAGATTCTGCCAGTGTGCCCGGAATGTCAACAGCTATCTGG
TGGCCACCTGCAGCAGACTTGACATGGGCATCCAGAAGTTTGGCTCTGAC
ATTACGGATTTGGTTGTGACCAATGTGGGTCCTAAGTACCCCATCCTGAT
GGGACCCAACTTCTTCCAGATCTGGGTCTTAAGAACGTGGCTTCCATCAG
ATCGCCAACTGCACCTTGGAGTACCTGCACGCCGAGGCCTTCCACGGACT
GACGAGCTGTACGCTGTTAACTTGACGGGAAGTTGTTGGCTATCATTATC
CGAATACCTTTGTTGGAACAAGAACTGCGCATGCTGACCATTTCGGTAAC
GACTGATGGGAGTCCAGCATCACTATTTGCTGAGCTCAGCATGAGGACTG
AC
UFO06943.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:29:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Gp150-RF | 4124 | CG5820-RF | 77..1163 | 9..1083 | 5040 | 98.3 | Plus |
| Gp150-RD | 4190 | CG5820-RD | 143..1229 | 9..1083 | 5040 | 98.3 | Plus |
| Gp150-RC | 4360 | CG5820-RC | 313..1399 | 9..1083 | 5040 | 98.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:29:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 22325194..22325727 | 9..542 | 2670 | 100 | Plus |
| 2R | 25286936 | 2R | 22325781..22326293 | 541..1046 | 2110 | 97.3 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:29:46 has no hits.
UFO06943.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:19:47 Download gff for
UFO06943.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Gp150-RC | 289..1395 | 1..1092 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:47:48 Download gff for
UFO06943.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Gp150-RC | 306..1412 | 1..1092 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:08:31 Download gff for
UFO06943.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Gp150-RC | 306..1412 | 1..1092 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:08:31 Download gff for
UFO06943.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 22325187..22325727 | 1..542 | 99 | -> | Plus |
| 2R | 22325783..22326342 | 543..1089 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:47:48 Download gff for
UFO06943.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 18212692..18213232 | 1..542 | 99 | -> | Plus |
| arm_2R | 18213288..18213847 | 543..1089 | 96 | | Plus |
