UFO06945.5prime Sequence
1106 bp (967 high quality bases) assembled on 2009-08-31
> UFO06945.5prime
CAGTCGACATGGGCGGCGGTGAAGTGAAGGTCGCTACCGTCGACGTCGAG
GGCGGGGACAATATGGCCACCTTGCCGGTGTCCCGCTCGCATACCGCCGG
CAGCACCGACAGCGCCGAGAAGAACAACGCCGCCAACAAGGAGATGGAAC
TCAAGAACGTCATGCCGCAGCCGCTGCAGAGGACATCGCTGTTCATCGTG
ACCAGTCTGGTGTACGCGATCCTTCTGATCGTCGTGTGCATTGCATACGT
TATCAGCGATGTAACCACCCACCGACTGCCGGTTTTGTACTACGAGACAT
TCTTCACATATCTATACGGCGTCAGCATACTCTTCCTTCTCTACGTCTTC
TGTTTCCTGCTGCAGGAGAGCTCTTGCTGCAATGGCGGCAATGGTGGCAG
CAAACCGAAACCCCAGCCCAAGGAGAAGAAGTCGAAGAAAGCCAAAAATG
CCGATCCGGCCGATTCGAAGGATGCGAAGGGCTCTAAGGACTCTGGCAAG
GCAGCCAAGGGCGCCGCATATCAGGAAGCACCCGTGGACGCCGAGGTGGC
CGTCACTCCAAAGAATGTGCGCAAGCGCAAGACAACCCATAGTGATCTGA
CGCACGGCAGCTTTTTCCTGCGAGTGGGAGCCATTGCTTTCGGTTTGGGC
GCCATGATCTATATTGGCCTGGAGTTTGGATCGTTCTTTGAGATACCCTT
CGATTCGCCGTGTCATCACATCCTGATCGGCGTAAATCCGCTGCTCCAGA
TGATCTTCACCTTCATGCAGATGTACTTTATATTCATGAATGCCCGGCTG
ACATCCATCGCTTCAAGGTGATCGCTCGCTTTGGCCTGATGCATGTGGTG
GCCACCAACATTTGCGTATGGATTCGCACCCTGTTAAGAATCGCTGCTGG
AAATCACGATCTATCATCAGAAGAACGAGCCAGAGGCCGGCGCCTCGTCA
TAGCCAACTCGATTCGTCAACACGCCCCTGCGGCATGCGGGCACCGTGCT
GCGCACCATGCGGGACCCAACAGCGAATTCAAGTGCTCACCGGGAAGACA
TTCTGCCAAGAATGTGTACAAAAACGACATGGTGCTATCCAACCGGTGCA
TACCGT
UFO06945.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:44:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG42492-RA | 4210 | CG42492-RA | 245..1335 | 9..1092 | 5055 | 98.1 | Plus |
| CG42492-RE | 6757 | CG42492-RE | 938..1877 | 181..1092 | 3975 | 95.5 | Plus |
| CG42492-RC | 4253 | CG42492-RC | 991..1930 | 181..1092 | 3975 | 95.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:44:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 5634241..5634427 | 366..180 | 935 | 100 | Minus |
| X | 23542271 | X | 5631194..5631491 | 1092..801 | 920 | 92.6 | Minus |
| X | 23542271 | X | 5636221..5636394 | 182..9 | 870 | 100 | Minus |
| X | 23542271 | X | 5633106..5633272 | 797..631 | 820 | 99.4 | Minus |
| X | 23542271 | X | 5633870..5634029 | 525..366 | 800 | 100 | Minus |
| X | 23542271 | X | 5633354..5633468 | 636..522 | 575 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:44:12 has no hits.
UFO06945.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:19:44 Download gff for
UFO06945.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42492-RA | 241..1280 | 9..1043 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:37:18 Download gff for
UFO06945.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42492-RA | 245..1284 | 9..1043 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:13:19 Download gff for
UFO06945.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42492-RA | 245..1284 | 9..1043 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:13:19 Download gff for
UFO06945.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 5631221..5631495 | 798..1064 | 93 | <- | Minus |
| X | 5633106..5633266 | 637..797 | 100 | <- | Minus |
| X | 5633354..5633465 | 525..636 | 100 | <- | Minus |
| X | 5633871..5634028 | 367..524 | 100 | <- | Minus |
| X | 5634241..5634425 | 182..366 | 100 | <- | Minus |
| X | 5636222..5636394 | 9..181 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:37:18 Download gff for
UFO06945.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 5527387..5527498 | 525..636 | 100 | <- | Minus |
| arm_X | 5527904..5528061 | 367..524 | 100 | <- | Minus |
| arm_X | 5525254..5525528 | 798..1064 | 93 | <- | Minus |
| arm_X | 5527139..5527299 | 637..797 | 100 | <- | Minus |
| arm_X | 5528274..5528458 | 182..366 | 100 | <- | Minus |
| arm_X | 5530255..5530427 | 9..181 | 100 | | Minus |
