UFO06947.5prime Sequence
1079 bp (958 high quality bases) assembled on 2009-08-31
> UFO06947.5prime
CAGTCGACATGGAAGGCTTCGACGATGCGGGTGTGTTCTTTTCGGACAAT
TTCGGCGGAGATAACCAGCAGGATGCGCAAATCAACTTGCAGGCGGTAAA
GAAGAAGTACAAGGAGTTCATCCGGACATTTAACGAGGAGAACTTTTTCT
ACAAATACCGTGACACCCTGAAGAGGAACTATCTTAATGGTCGCTACTTC
TTGGAGATTGAGATGGAGGATTTGGTGGGCTTCGATGAGACCTTGGCTGA
CAAGCTGAACAAGCAGCCGACGGAGCATTTGGAAATCTTCGAGGAGGCTG
CCCGGGAGGTAGCCGACGAGATCACAGCTCCCCGGCCGGAGCACGAGGAA
CATATGCACGACATCCAGATTCTTCTGAGCTCCAATGCGAATCCCACCAA
CATACGACAGTTGAAGTCGGACTGCGTATCCAAGCTGGTTAAGATCGCCG
GAATCATTGTCGCAGCCTCAGGAATAAGTGCCAAGGCTACGCGGATGTCT
ATCCAATGCCTGTCCTGCAGCACGGTCATACCGAATCTCAAAGTGAATCC
AGGGTTTGGGGGGCTACGCCCTACCCAGGAAGTGCAACACGGAGCAGGCG
GGCAGACCCAAGTGCCCGCTGGACCCCTTCTTCATCATGCCGGACAAGTG
CAAGTGCGTCGATTTCCAGACCCTTAAGTTGCAAGAGCTCCCCGACTTTG
TGCCACAGGGTGAGATTCCCCGCCACTTGCAGCTCTTCTGCGATCGCTCG
CTCTGTGAACGCGTGGTGCCCGGCAATCGCGTGCTTATCCAGGGCATATA
CTCCATTCGCAAGGTGGGCAAACCCTCGCGTCGGGATGGTCGCGAGAAAG
CCGTCGTTGGAGTCCGTGCTCCTTACATGAAGGTGGTGGGGCATCACCGT
CGACTCAGAGGGTGCGGGTGCCATCTCCCGATACAGCACATCACATCCGA
TGAGGAGGAGCACTTCCGGCGAATGGCCGCCTCTGGGGACATCTACGAAC
GTCTCTCACAGTCACTGGGCCAGCATCTTCGGTCTCGGAATTCAAGAAAG
CATAACTTGTATGCTTTGGCGGGTCCGGT
UFO06947.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:17:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Mcm5-RA | 2452 | CG4082-RA | 142..1214 | 9..1075 | 5090 | 98.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:17:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 10788870..10789781 | 160..1067 | 4145 | 98.7 | Plus |
| 3R | 32079331 | 3R | 10788665..10788816 | 9..160 | 760 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 23:17:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| R1-2 | 3216 | R1-2 R1-2 3216bp | 1755..1793 | 106..144 | 114 | 76.9 | Plus |
UFO06947.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:19:43 Download gff for
UFO06947.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mcm5-RA | 130..1214 | 1..1079 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:55:03 Download gff for
UFO06947.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mcm5-RA | 134..1218 | 1..1079 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:56:21 Download gff for
UFO06947.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mcm5-RA | 134..1218 | 1..1079 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:56:21 Download gff for
UFO06947.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 10788657..10788816 | 1..160 | 97 | -> | Plus |
| 3R | 10788871..10789795 | 161..1079 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:55:03 Download gff for
UFO06947.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 6614379..6614538 | 1..160 | 97 | -> | Plus |
| arm_3R | 6614593..6615517 | 161..1079 | 98 | | Plus |
