UFO06948.5prime Sequence
1084 bp (1002 high quality bases) assembled on 2009-08-31
> UFO06948.5prime
CAGTCGACATGTTTTATAAACTATGTGCTTTTATGTGTTTCTTGATAGTT
GGAGGGCATGTCACCACCACAATGGCCAGTGACAGCATATCGGGTTATAT
ACGAAAATGCTGTATAAATGGACTTCGACATGCTCGTACGACCGCCTCTT
GCAAAAAAATCGACATAGCCCCAACAATAATCCCGCAGCTCTGGCTTGGA
CTTTGTCATTCTACACTTGAAGTCTGCTGTTCTCGAGAACTGGACCATCA
AGATTGCGAGCTAGGTCGACTGGCTGCTTTAGACGGTACTCGCTGTGACG
GAGAAGGAAATGTAACATCTAGCTCCTATGCGACATGTTGTCGTTCTTGT
CAAATCGGATTAGCAGTTAAAGCGAGTAAAGCCAATTGCAAAGATCCATT
ATTTTCATTTATTTTCTTAATTGAATCATACCGAGCGTGCTGTTACGGAT
CTGCTGACTTTAAAGACCAGCCCGGTATCGACGAAATCGATAAGGCTAAT
TCTATTACTGATGAAGGTGAATTGCCGTTTGTTTCTGAAGAGGATATGAA
TGTAACTATTGTTCTTACCGGCGATGATGACATATGTGGAAAAATTGAAA
ACCTTTGCGCTCACATATGCGAAAACACTTTCGACGCATACCAATGTAAG
TGCCACCCCGGGTTTATGTTAGATAATAACAACGTAACATGCTCTCCGAT
GAAAACCCAAATATGTCCCAGCGGTTACAATTTAGATAAACTGGATAACA
AATGCATTGACATTGATGAATGCCGGGAAGATCTTCATGACTGCAAATCA
TCCCAATATTGCCATAATACGAATGGCGGATACCACTGCTTAAATGTGAA
AGAAAAAGAGTGTCCACCAGGATTTCATTATGACCATGATTACGATGCAT
GTAAAGATGATTACAAATGCAAGATCGTAAATGGGTTAAAATTCAATCCT
GTGATAAAGGATTCAGCTTGCATAACGGTACCTGTTCCGATATTGACCGA
GTGCCTCCCATAAAATCATAAACAACTGTTCATGTCATAAGTAATCAGGA
ATGTGTTAACCATGGAGCTATCTGCATGCCTGCT
UFO06948.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:51:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31999-RC | 3639 | CG31999-RC | 790..1839 | 9..1060 | 5045 | 99 | Plus |
| CG31999-RA | 2972 | CG31999-RA | 123..1172 | 9..1060 | 5045 | 99 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:51:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 4 | 1348131 | 4 | 223945..224440 | 576..81 | 2480 | 100 | Minus |
| 4 | 1348131 | 4 | 223557..223887 | 906..576 | 1655 | 100 | Minus |
| 4 | 1348131 | 4 | 222861..223014 | 1060..905 | 450 | 91.7 | Minus |
| 4 | 1348131 | 4 | 225762..225834 | 81..9 | 365 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:51:23 has no hits.
UFO06948.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:19:43 Download gff for
UFO06948.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31999-RA | 117..1185 | 5..1071 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:53:03 Download gff for
UFO06948.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31999-RA | 119..1187 | 5..1071 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:31:11 Download gff for
UFO06948.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31999-RA | 119..1187 | 5..1071 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:31:11 Download gff for
UFO06948.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 4 | 223557..223886 | 577..906 | 100 | <- | Minus |
| 4 | 223945..224439 | 82..576 | 100 | <- | Minus |
| 4 | 225762..225838 | 5..81 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:53:03 Download gff for
UFO06948.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_4 | 244183..244512 | 577..906 | 100 | <- | Minus |
| arm_4 | 244571..245065 | 82..576 | 100 | <- | Minus |
| arm_4 | 246388..246464 | 5..81 | 97 | | Minus |
