UFO06949.5prime Sequence
1053 bp (932 high quality bases) assembled on 2009-08-31
> UFO06949.5prime
CAGTCGACATGCAGTTTTGGATAACTCTGACATTTGCCGTGCACTTGGCT
ACGACCATCTGCCACGTAATGGCCGCAGTTACTGCTCCAACTCCGGCTGC
TCAGGTGGCAGCCCCACCTGTGCAAAAGTTTCACCTGACGCCCCACGATC
TGCAGATACTCGAGGGCACCGACACCCTCCTGCGCTGCGAGGTATCGAAC
CGGGCGGGCAAAGTCCAGTGGACCAAGGATGGCTTTGCGCTGGGATTCTC
GGCCGTAATTCCCGGATTCCCACGCTATTCTGTGCTGGTGGATGCCAAAC
AGAATGCCTACAATCTGCAGATCAAGAACGCCACGCTGGAGGACGATGCC
GAATACCAATGCCAGGTGGGTCCTGCTGCTGGAAATCCCGCCATTCGTGC
CAATGCCAAGTTGAGCATAGTGGCTGCTCCGAGTAGCATCGTTATCGAGG
GCTATGCCCGGAATGCCCGAGTGGAGGTGGAGGAGCGCCAGAATCTTACG
CTGCACTGTATCGCCGAGAACGCCAATCCGGCGGCGGAGATTGTCTGGTT
CCAGGGCGAAGTTCCAGTCTCCACGGCCCCCATCGTGACGGTGAATCAAA
CTGCCCCGAAGCGATTCACAACTAGCTCCACTTTGCACCTGCAGCCGCGC
GCCGAAGACGATTACAAGGAGTTCTCCTGCGAGGCGCGTCACAAGGCTCT
GCCCCCCGATGTACCGATGCGCGCCCAGGTGCAGCTCTCCGTACTCTATC
CGCCCGGCGCTCCGTTCTTTGAGGGCTACAGCCAGGGTGAGACCCTGCAT
CGCGGCCAGGAAGTTCAAATCCGCCTGTCGAAGCCGCGGCGGCAATCCCC
CGGCCCAATTTGACTTGGTACCGAAATGGCGGGGCCATCAGTTCCCCACA
ACGCACCTCGGGGCCGTCTGTCGGAGACGTTAACAAGTTCACCGCCGCCG
CCGAGGAAAATGGGGCTTATTTGGTGGTGCGAGCCAAAATCTGCTGGCGA
CACTCCCTTCGCGCGCCGAACTCAATTGACTGTCTGTATGCTCCAGAGAT
GTT
UFO06949.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:54:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
hbs-RC | 5478 | CG7449-RC | 396..1432 | 9..1044 | 4845 | 98.4 | Plus |
hbs-RB | 4722 | CG7449-RB | 396..1432 | 9..1044 | 4845 | 98.4 | Plus |
hbs-RA | 4701 | CG7449-RA | 396..1432 | 9..1044 | 4845 | 98.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:54:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 15035980..15036508 | 48..576 | 2645 | 100 | Plus |
2R | 25286936 | 2R | 15036864..15037142 | 748..1027 | 950 | 94 | Plus |
2R | 25286936 | 2R | 15036604..15036775 | 576..747 | 860 | 100 | Plus |
2R | 25286936 | 2R | 8812821..8813060 | 138..377 | 270 | 74.2 | Plus |
2R | 25286936 | 2R | 15011791..15011830 | 9..48 | 200 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 18:54:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
accord | 7404 | accord ACCORD 7404bp | 5186..5242 | 13..69 | 114 | 66.7 | Plus |
UFO06949.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:19:41 Download gff for
UFO06949.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
hbs-RB | 386..1440 | 1..1053 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:26:09 Download gff for
UFO06949.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
hbs-RA | 388..1442 | 1..1053 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:41:19 Download gff for
UFO06949.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
hbs-RA | 388..1442 | 1..1053 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:41:19 Download gff for
UFO06949.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 15011783..15011830 | 1..48 | 91 | -> | Plus |
2R | 15035981..15036508 | 49..576 | 100 | -> | Plus |
2R | 15036605..15036775 | 577..747 | 100 | -> | Plus |
2R | 15036864..15037154 | 748..1037 | 94 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:26:09 Download gff for
UFO06949.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 10899288..10899335 | 1..48 | 91 | -> | Plus |
arm_2R | 10923486..10924013 | 49..576 | 100 | -> | Plus |
arm_2R | 10924110..10924280 | 577..747 | 100 | -> | Plus |
arm_2R | 10924369..10924659 | 748..1037 | 94 | | Plus |