Clone UFO06949 Report

Search the DGRC for UFO06949

Clone and Library Details

Library:UFO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2008-06-20
Comments:BD Creator expression clones with C-terminus FLAG HA tag for transgenic expression using PhiC31 integrase system
Original Plate Number:69
Well:49
Vector:pUAST-CFLAGHA-BD-PHI
Associated Gene/Transcripthbs-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

UFO06949.5prime Sequence

1053 bp (932 high quality bases) assembled on 2009-08-31

> UFO06949.5prime
CAGTCGACATGCAGTTTTGGATAACTCTGACATTTGCCGTGCACTTGGCT
ACGACCATCTGCCACGTAATGGCCGCAGTTACTGCTCCAACTCCGGCTGC
TCAGGTGGCAGCCCCACCTGTGCAAAAGTTTCACCTGACGCCCCACGATC
TGCAGATACTCGAGGGCACCGACACCCTCCTGCGCTGCGAGGTATCGAAC
CGGGCGGGCAAAGTCCAGTGGACCAAGGATGGCTTTGCGCTGGGATTCTC
GGCCGTAATTCCCGGATTCCCACGCTATTCTGTGCTGGTGGATGCCAAAC
AGAATGCCTACAATCTGCAGATCAAGAACGCCACGCTGGAGGACGATGCC
GAATACCAATGCCAGGTGGGTCCTGCTGCTGGAAATCCCGCCATTCGTGC
CAATGCCAAGTTGAGCATAGTGGCTGCTCCGAGTAGCATCGTTATCGAGG
GCTATGCCCGGAATGCCCGAGTGGAGGTGGAGGAGCGCCAGAATCTTACG
CTGCACTGTATCGCCGAGAACGCCAATCCGGCGGCGGAGATTGTCTGGTT
CCAGGGCGAAGTTCCAGTCTCCACGGCCCCCATCGTGACGGTGAATCAAA
CTGCCCCGAAGCGATTCACAACTAGCTCCACTTTGCACCTGCAGCCGCGC
GCCGAAGACGATTACAAGGAGTTCTCCTGCGAGGCGCGTCACAAGGCTCT
GCCCCCCGATGTACCGATGCGCGCCCAGGTGCAGCTCTCCGTACTCTATC
CGCCCGGCGCTCCGTTCTTTGAGGGCTACAGCCAGGGTGAGACCCTGCAT
CGCGGCCAGGAAGTTCAAATCCGCCTGTCGAAGCCGCGGCGGCAATCCCC
CGGCCCAATTTGACTTGGTACCGAAATGGCGGGGCCATCAGTTCCCCACA
ACGCACCTCGGGGCCGTCTGTCGGAGACGTTAACAAGTTCACCGCCGCCG
CCGAGGAAAATGGGGCTTATTTGGTGGTGCGAGCCAAAATCTGCTGGCGA
CACTCCCTTCGCGCGCCGAACTCAATTGACTGTCTGTATGCTCCAGAGAT
GTT

UFO06949.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:54:57
Subject Length Description Subject Range Query Range Score Percent Strand
hbs-RC 5478 CG7449-RC 396..1432 9..1044 4845 98.4 Plus
hbs-RB 4722 CG7449-RB 396..1432 9..1044 4845 98.4 Plus
hbs-RA 4701 CG7449-RA 396..1432 9..1044 4845 98.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:54:56
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 15035980..15036508 48..576 2645 100 Plus
2R 25286936 2R 15036864..15037142 748..1027 950 94 Plus
2R 25286936 2R 15036604..15036775 576..747 860 100 Plus
2R 25286936 2R 8812821..8813060 138..377 270 74.2 Plus
2R 25286936 2R 15011791..15011830 9..48 200 100 Plus
Blast to na_te.dros performed 2014-11-28 18:54:56
Subject Length Description Subject Range Query Range Score Percent Strand
accord 7404 accord ACCORD 7404bp 5186..5242 13..69 114 66.7 Plus

UFO06949.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:19:41 Download gff for UFO06949.5prime
Subject Subject Range Query Range Percent Splice Strand
hbs-RB 386..1440 1..1053 97   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:26:09 Download gff for UFO06949.5prime
Subject Subject Range Query Range Percent Splice Strand
hbs-RA 388..1442 1..1053 97   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:41:19 Download gff for UFO06949.5prime
Subject Subject Range Query Range Percent Splice Strand
hbs-RA 388..1442 1..1053 97   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:41:19 Download gff for UFO06949.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 15011783..15011830 1..48 91 -> Plus
2R 15035981..15036508 49..576 100 -> Plus
2R 15036605..15036775 577..747 100 -> Plus
2R 15036864..15037154 748..1037 94   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:26:09 Download gff for UFO06949.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 10899288..10899335 1..48 91 -> Plus
arm_2R 10923486..10924013 49..576 100 -> Plus
arm_2R 10924110..10924280 577..747 100 -> Plus
arm_2R 10924369..10924659 748..1037 94   Plus