UFO06950.5prime Sequence
1053 bp (954 high quality bases) assembled on 2009-08-31
> UFO06950.5prime
CAGTCGACATGAACAATCTGTCGCTGAAAGCTTGGCGTTCCACAGTCTCC
TGTGGCCCCAATCTTCGACAATGTGTGCCGAGGATCAGTGGAGCAGGTTC
CAGGCGAGCGCAGTGCCGCGAAAGCTCCACGGGCGTGGCCACTTGTCCCC
ATCTGGCGGATTCGGAGGAGGCCAGTGCACCGCGAATACACTCCACTTCC
GAGTGGCAAAACGCTCTGCCCTACAATCAAATACCCGGACCTAAGCCCAT
CCCCATTCTGGGCAATACATGGAGACTGATGCCAATAATTGGTCAATACA
CCATCTCTGATGTGGCCAAAATATCATCGCTGCTGCACGATCGTTATGGT
AGAATTGTGCGTTTTGGAGGTCTTATAGGACGGCCCGATCTTTTGTTCAT
CTACGATGCCGATGAAATTGAAAAGTGCTATCGTAGCGAGGGACCCACCC
CGTTCCGTCCCTCGATGCCCAGTTTGGTCAAGTACAAGAGTGTGGTGCGC
AAGGATTTCTTTGGGGATCTGGGCGGCGTAGTCGGAGTACATGGAGAGCC
TTGGCGGGAGTTCCGTTCGCGTGTCCAGAAACCGGTGCTGCAGTTGTCCA
CCATTCGCCGGTATCTACAGCCGCTGGAGGTTATCACCGAGGACTTCCTG
GTGCGCTGCGAAAACCTGTTGGATGAAAACCAAGAGCTCCCCGAGGATTT
CGACAATGAGATTCACAAATGGTCCCTGAAATGCATTGGTCGCGTTGCCC
TCGACACTCGTTTGGGCTGCCTGGAATCGAATCTGAAGCCAGATTCGGAA
CCCCAGCAAATCATTGACGCCGCCAAGTATGCCCTGCGCAACGTGGCCAC
TTTGGAGCTGAAAGCTCCCTATTGAGATACTTTCCCACGCCTTTGTGGAC
GCCGCTACGTGAGAACATGAACCTTTTTTTGTTGGTGTCTGCATGAAGTA
CATTCGAAATGGCCACCGGAAAGAACTGAGACCCAAGATTCCAGTCTACT
GCCGGCGAGCCTCGCTGGTGGAGAAGTCATCCTTTCCGCGAAGACAAAAA
TAG
UFO06950.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:36:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cyp301a1-RA | 1940 | CG8587-RA | 174..1201 | 9..1036 | 4805 | 98.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:36:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 12566358..12566623 | 9..274 | 1330 | 100 | Plus |
| 2R | 25286936 | 2R | 12567651..12567845 | 539..733 | 960 | 99.5 | Plus |
| 2R | 25286936 | 2R | 12567905..12568101 | 733..928 | 825 | 98 | Plus |
| 2R | 25286936 | 2R | 12567184..12567336 | 273..425 | 765 | 100 | Plus |
| 2R | 25286936 | 2R | 12567482..12567596 | 424..538 | 575 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:36:44 has no hits.
UFO06950.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:19:39 Download gff for
UFO06950.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cyp301a1-RA | 166..1214 | 1..1050 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:32:12 Download gff for
UFO06950.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cyp301a1-RA | 168..1216 | 1..1050 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:23:01 Download gff for
UFO06950.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cyp301a1-RA | 168..1216 | 1..1050 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:23:01 Download gff for
UFO06950.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 12567186..12567336 | 275..425 | 100 | -> | Plus |
| 2R | 12567484..12567596 | 426..538 | 100 | -> | Plus |
| 2R | 12567651..12567844 | 539..732 | 99 | -> | Plus |
| 2R | 12567905..12568106 | 733..935 | 97 | -> | Plus |
| 2R | 12566352..12566623 | 1..274 | 98 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:32:12 Download gff for
UFO06950.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 8453857..8454128 | 1..274 | 98 | -> | Plus |
| arm_2R | 8454691..8454841 | 275..425 | 100 | -> | Plus |
| arm_2R | 8454989..8455101 | 426..538 | 100 | -> | Plus |
| arm_2R | 8455156..8455349 | 539..732 | 99 | -> | Plus |
| arm_2R | 8455410..8455611 | 733..935 | 97 | -> | Plus |
