UFO06951.5prime Sequence
1116 bp (1023 high quality bases) assembled on 2009-08-31
> UFO06951.5prime
CAGTCGACATGAAGGTGTTCCTAACTATTCTGGCTTTGGCCGTGGCCTCC
GCCTCGGCGTACGAGAGCGTCGTGCACCCCAAGGATCTGTCCAAGGTGGC
CAAGATCGAGGGTCGCATCACCAACGGCTATCCGGCTGAGGAGGGCAAGG
CTCCCTACACCGTCGGTCTGGGTTTCAGCGGCGGCTGGTGGTGCGGTGGC
TCCATCATCTCCAACGAGTGGGTCCTCACCGCCGAGCACTGCATCGGAGG
TGATGCAGTGACTGTCTACTTCGGAGCAACCTGGCGCACCAACGCCCAGT
TCACCCACTGGGTTGGAAGCGGCAACTTCATCACCCACGGATCTGCTGAC
ATCGCCCTCATCCGCATTCCCCACGTGGACTTCTGGCACATGGTGAACAA
GGTGGAGCTGCCCAGCTACAACGATCGCTACAACGACTACAACGAATGGT
GGGCTGTTGCCTGCGGCTGGGGAGGCACCTATGACGGCAGCCCACTGCCC
GACTACCTGCAGTGTGTCGATCTCCAGATCATCCACAACTCCGAGTGCGC
CAGCTACTACGGAACCGGCACCGTCGGCGACAACATCATCTGCGTGCGCG
TGGTCGATGGCAAGGGCACCTGCGGTGGCGACTCCGGCGGTCCTCTGGTC
ACCCATGACGGCAGCAAGCTTGTGGGAGTCACCAACTGGGTGTCGGGAGC
CGGTTGCCAGGCTGGCCACCCCGCTGGCTTCCAGCGTGTGACCTACCACT
TGGACTGGATCCGTGACCACACCGGCATTGCTTACTACGCAAGCTTTCTA
GACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGTCATAATCATAATCAT
AATCATAATCATAATCACAACTAGCCTAGAGATCCTGGTCATGACTAGTG
CTTGATTCTCACCAATAAAAACGCCCGGCGCAACCGAGCGTTCTGAACAA
TCCAGATGGAGTTCTGAGTCATTACTGGATCTATCACAGAGTCCAGCGAG
CCTCGATATCAATTACGCCCCGCCCTGCCATCATCGCAGTACTGTTGTAT
TCAATAGCATTCTGCCGACTGCAGCCATCCAAACGCATGATGACTGAATC
GCCAGCGATCGGACCT
UFO06951.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:17:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Jon66Ci-RA | 838 | CG7118-RA | 17..798 | 7..788 | 3910 | 100 | Plus |
| Jon66Cii-RA | 830 | CG7170-RA | 113..789 | 109..788 | 2200 | 88.6 | Plus |
| Jon25Biii-RA | 827 | CG8871-RA | 19..795 | 8..787 | 1610 | 80.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:17:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 8391556..8392337 | 7..788 | 3910 | 100 | Plus |
| 3L | 28110227 | 3L | 8392861..8393537 | 788..109 | 2145 | 88.3 | Minus |
| 2L | 23513712 | 2L | 4949973..4950749 | 787..8 | 1535 | 80.3 | Minus |
| 3R | 32079331 | 3R | 30487347..30487531 | 532..348 | 505 | 84.9 | Minus |
| 2L | 23513712 | 2L | 4954791..4955054 | 332..78 | 395 | 78.4 | Minus |
| 3L | 28110227 | 3L | 6053938..6054152 | 472..258 | 385 | 78.6 | Minus |
| 2L | 23513712 | 2L | 4954632..4954757 | 473..348 | 375 | 86.5 | Minus |
| 3L | 28110227 | 3L | 6052751..6052857 | 348..454 | 295 | 85 | Plus |
| 2L | 23513712 | 2L | 4952922..4953001 | 183..104 | 235 | 86.2 | Minus |
| 2L | 23513712 | 2L | 4954326..4954497 | 788..617 | 200 | 74.4 | Minus |
Blast to na_te.dros performed on 2014-11-28 23:17:34 has no hits.
UFO06951.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:19:39 Download gff for
UFO06951.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Jon66Ci-RA | 10..801 | 1..794 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:54:56 Download gff for
UFO06951.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Jon66Ci-RA | 12..803 | 1..794 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:56:16 Download gff for
UFO06951.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Jon66Ci-RA | 12..803 | 1..794 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:56:16 Download gff for
UFO06951.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 8391551..8392342 | 1..794 | 99 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:54:56 Download gff for
UFO06951.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 8384651..8385442 | 1..794 | 99 | == | Plus |
