UFO06952.5prime Sequence
1100 bp (1002 high quality bases) assembled on 2009-08-31
> UFO06952.5prime
CAGTCGACATGAGCGAGAACGAGAAGCGTCCCGATCTGGAGGATCAGGAT
CAGGATCAGAATCAGGAGCAGGCTGGCGGCAGGAAAATGGAGATCCTGCT
GGAACTAAACCTAAAGCAGAAGCTGGCCACCCGACTAGGCACCATCCTGC
TGGCCACAGTGATCTTCGGCGCCTTTTGCTGGGACAACGCGTTGGCCAGT
CTAACACTGGGAGCAGTGGTGGCTCTCCTGCTCAGAAATCCCACCTTCGT
CTTTGCCTTGGTAATGACCGCGTCCAGGGACCTAAAGGCTTTCCAGCGAT
TCGTGGCCCTCAACATCTACCTGCTAAGAAAGGATCGCGGCGGATTCACT
GTGGCCCGCTGTTTCCAGGACCAGGCCAGACGCCGCCCCAAAAAGACATG
CTTCGTGATGGACGATCGCCATTTAAGCTTTGCAGAGGCTCTGGAGTTTA
GCCAAAAGATAGCTGGATATTTTAGCGATCGCGGCCTGGAGAGGGGCGAC
TGTGTGGCCCTACTAATGGAAACGCGTCTGGAGTATCCCTGCATTTGGTT
GGGTCTCTCCCAGCTCGGGGTAATCACAGCCCTTATTAACTCCAATCTGC
GCGGGGAGTCTCTGCTGCACTCCATCAAAGTGGCCAATGCCAAGGCCCTA
ATTGTGGGCAGTGAACTCCTGGATGTGCTGGTATCACTTAGGGAGAAGGA
GCAGTTGGACGAGGTGCCCATCTATCAGTACACAGATGACGAGGTTCGCG
GGGTGGCTGGACATGATCTTTTGCCAGGAGCTGTGGACTTGGTTACTGCT
CTAAAGACCCAAAAGAAACTGGAGCTACCGAGTGCTGTCTGTCCTGTAGA
AGCTCGTTCCAAATTGCTCTACGTTTACACCTCTGGAACTACGGCTTGCC
CAAAGCAGCTGTGATCACCACCTGCGTTCCTCTTCATGTCTGCAGATCTA
CTACATGCTCAGATGTCCAGCGACGATGTGGTGTACGATCCCTTCCCCTT
CTACCACACCGCTGGTGAATTGTGGGGTGGCATGCCATCCTCAATGGATC
CACGGTGGTGCTGCCCAAGTTCTCGCAGACTTCTGGCTGACTGCAATCCC
UFO06952.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:17:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3394-RA | 2308 | CG3394-RA | 125..1232 | 9..1098 | 5040 | 97.9 | Plus |
| CG3394-RB | 2357 | CG3394-RB | 175..1281 | 10..1098 | 5035 | 97.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:17:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 24295908..24296699 | 287..1068 | 3415 | 97.5 | Plus |
| 2R | 25286936 | 2R | 24295573..24295850 | 10..287 | 1390 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 23:17:24 has no hits.
UFO06952.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:19:38 Download gff for
UFO06952.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3394-RA | 124..1203 | 9..1075 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:54:49 Download gff for
UFO06952.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3394-RA | 125..1204 | 9..1075 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:56:12 Download gff for
UFO06952.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3394-RA | 125..1204 | 9..1075 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:56:12 Download gff for
UFO06952.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 24295569..24295849 | 6..286 | 99 | -> | Plus |
| 2R | 24295908..24296709 | 287..1075 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:54:49 Download gff for
UFO06952.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 20183092..20183372 | 6..286 | 99 | -> | Plus |
| arm_2R | 20183431..20184232 | 287..1075 | 97 | | Plus |
