UFO06953.5prime Sequence
1097 bp (937 high quality bases) assembled on 2009-08-31
> UFO06953.5prime
CAGTCGACATGAGGGGCATGATAATTGTGCCCATGGACCTGGAACCCGGC
TTCCGCAAAGCAGACATACACAATATACCCGCTTTGAACAGCGGAATGGT
GTACAATTTTTGTCTATCCGGCGCATCTGAGAAATCAAAACAAATACCAA
CGAATAGATGTGATCTCCTCACGGATTACGTCCAGGTGCGCAGACATGGC
GACGTGTGCGAACTCAAGGGACTCGTGTTTTCTGCCACCGACTTCGCCAA
CACGGTAACTCACGCCAATGTATCGCTTAAGATCGTCGAAAGTGCTCAGA
TGATCATGGACGGTCAATGCAGCCTGTGCACTGCAGCATGTACTTGTGCC
CACATCGTGGCCTTCACCTTCTGGCTGCTAAACAAGAGCACAGATCGAAA
TCCCTCGGCTGTGGTGGAGTTTTGGGGCCACGAGTTGGAAAATCTGGTGC
AACCGGAGCCCACAACTGCTACTCGAATATGTGATATAATTCCCAAGGAT
GATGTGCGAATGGAAAGCGAACTAAACTCGAAAGAACTTAGCGCCAGCGA
GGGAGAGGCTTTCCTAGTGACCATTCTGAATGAACTGGCCGACTGTGGCA
GGGACTCGGCGCTCTACCGGCAATGTGTGGAGACCACCGATGAGTTCGAG
CCCATGTTCGTACACCATGTGCTGCTCCGAGCAAATGAGTACAATGTCGT
CGATCCGTCCAGCTATGTGCAACACATGGAGGCACAGGCACATACGGGTA
TTATCGAAAGTCTGTACGAGGCAACGCGAAGCAAATACAAATCCCGATTG
TGGGTGGAGGTACAGTATATGCGCATCCGTTGCTCCATGATGCACATGAT
CATAAGCCGCAAAGCTCTGATGATGACGATCAATCTTCAATATGATGTTT
TGCAGAGGACGTGACAGGATACGAGGATCAGGTGCTGCAGTGGAGCGCAA
GCGCTTCATATTGGAACAGACTGACAGGCTGGAAAAAATACTACGTAAAA
TGCGGTCTGGATGCTGCACGAGAACTTCCCGTTCCTGGGCGACCGCCCTG
GATGTGCTTCGGGACATTCCACTTGGCGAGATCAATTCAGCATAGCT
UFO06953.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:29:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8366-RA | 1472 | CG8366-RA | 79..1123 | 9..1048 | 4770 | 97.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:29:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 15955574..15956281 | 340..1041 | 2945 | 96.3 | Plus |
| 2R | 25286936 | 2R | 15955323..15955518 | 146..341 | 980 | 100 | Plus |
| 2R | 25286936 | 2R | 15955118..15955254 | 9..145 | 685 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:29:13 has no hits.
UFO06953.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:19:37 Download gff for
UFO06953.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8366-RA | 77..1129 | 9..1057 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:43:37 Download gff for
UFO06953.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8366-RA | 79..1131 | 9..1057 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:03:07 Download gff for
UFO06953.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8366-RA | 79..1131 | 9..1057 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:03:07 Download gff for
UFO06953.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 15955118..15955254 | 9..145 | 100 | -> | Plus |
| 2R | 15955323..15955516 | 146..339 | 100 | -> | Plus |
| 2R | 15955574..15956290 | 340..1050 | 96 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:43:37 Download gff for
UFO06953.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 11842623..11842759 | 9..145 | 100 | -> | Plus |
| arm_2R | 11842828..11843021 | 146..339 | 100 | -> | Plus |
| arm_2R | 11843079..11843795 | 340..1050 | 96 | -> | Plus |
