UFO06954.5prime Sequence
1140 bp (1013 high quality bases) assembled on 2009-08-31
> UFO06954.5prime
CAGTCGACATGAATCTGATCAACATGGACTCGGAAAACAGGGTGGTGCTC
AATGTGGGTGGCATTAGGCACGAAACCTACAAGGCCACGCTGAAGAAGAT
TCCGGCTACGCGATTATCGCGATTAACAGAGGCGCTGGCCAACTATGATC
CGATACTGAATGAGTACTTCTTTGATCGGCATCCGGGCGTCTTCGCACAA
GTGCTCAACTATTACAGAACTGGAAAGCTGCATTATCCCACGGATGTGTG
CGGTCCGCTGTTTGAGGAGGAATTGGAGTTCTGGGGCCTAGACTCGAACC
AAGTGGAGCCCTGCTGTTGGATGACCTACACACAGCATCGCGACACCCAG
GAAACCCTAGCCGTACTCGATCGTCTCGATCTGGATACGGAAAAACCGTC
CGAAGAGGAATTGGCACGCAAATTCGGCTTCGAGGAGGACTACTACAAAG
GCACAATATCCTGGTGGCAGGAAATGAAGCCGCGCATTTGGTCCTTGTTC
GATGAGCCCTACAGTTCCAATGCAGCCAAGACTATTGGCGTGGTTTCGGT
GTTCTTCATCTGCATTTCGATCCTGTCGTTCTGCCTGAAGACCCATCCCG
ATATGCGGGTACCCATCGTCCGGAACATTACAGTGAAAACTGCGAATGGA
AGTAATGGCTGGTTTTTGGACAAAACGCAGACCAATGCGCACATAGCCTT
CTTCTATATCGAATGCGTGTGCAATGCCTGGTTTACCTTTGAAATATTGG
TGCGCTTTATCTCATCGCCGAACAAGTGGGAGTTCATCAAGTCATCTGTT
AACATCATAGACTACATAGCGACGCTTAGTTTTTATATCGATCTAGTGCT
TCAGCGGTTCGCATCGCACCTGGAGAACGCTGACATCCTCGAGTTCTTCT
CGATCATCCGCATCATGCGTCTGTTCAAGCTGACGCCGCCACTCGTCCGG
ACTGAGATCCTGATCCAGACGTTCCGGGCCTCGGCCAAGGAGCTGACCCT
GCTGGTGTTCCTTCCTCGTCCTGGGGCATCTTGATCTTCGCCAGCCTTGT
CTACATACAGGGGAGCGCATCCAGCCCAATCCGCCCAACGACTCAACAGC
ATACGCCTGGGCCTGTGGGTGGGCCTGTTCCAATGAACAC
UFO06954.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:03:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Shaw-RE | 4380 | CG2822-RE | 457..1587 | 8..1140 | 5330 | 98.5 | Plus |
| Shaw-RD | 4557 | CG2822-RD | 303..1433 | 8..1140 | 5330 | 98.5 | Plus |
| Shaw-RC | 2428 | CG2822-RC | 45..1175 | 8..1140 | 5330 | 98.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:03:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 3722652..3723018 | 749..1118 | 1435 | 96.8 | Plus |
| 2L | 23513712 | 2L | 3722351..3722573 | 529..751 | 1115 | 100 | Plus |
| 2L | 23513712 | 2L | 3721380..3721589 | 8..217 | 1050 | 100 | Plus |
| 2L | 23513712 | 2L | 3721820..3722017 | 333..530 | 990 | 100 | Plus |
| 2L | 23513712 | 2L | 3721640..3721762 | 213..335 | 615 | 100 | Plus |
| 2L | 23513712 | 2L | 9384640..9384785 | 217..72 | 295 | 80.1 | Minus |
| 2L | 23513712 | 2L | 9381661..9381765 | 320..216 | 240 | 81.9 | Minus |
Blast to na_te.dros performed on 2014-11-28 23:03:09 has no hits.
UFO06954.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:19:35 Download gff for
UFO06954.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Shaw-RC | 41..1175 | 1..1140 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:14:11 Download gff for
UFO06954.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Shaw-RC | 41..1175 | 1..1140 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:48:20 Download gff for
UFO06954.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Shaw-RC | 41..1175 | 1..1140 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:48:20 Download gff for
UFO06954.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 3722653..3723041 | 750..1140 | 95 | | Plus |
| 2L | 3721376..3721589 | 1..217 | 98 | -> | Plus |
| 2L | 3721645..3721762 | 218..335 | 100 | -> | Plus |
| 2L | 3721823..3722017 | 336..530 | 100 | -> | Plus |
| 2L | 3722353..3722571 | 531..749 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:14:11 Download gff for
UFO06954.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 3721376..3721589 | 1..217 | 98 | -> | Plus |
| arm_2L | 3721645..3721762 | 218..335 | 100 | -> | Plus |
| arm_2L | 3721823..3722017 | 336..530 | 100 | -> | Plus |
| arm_2L | 3722353..3722571 | 531..749 | 100 | -> | Plus |
| arm_2L | 3722653..3723041 | 750..1140 | 95 | | Plus |
