UFO06956.5prime Sequence
1136 bp (984 high quality bases) assembled on 2009-08-31
> UFO06956.5prime
CAGTCGACATGGCGTTGACAATTACAAAATTTCGAACTTCGAGGGGGATG
GTGGTGGCCGTACAGCCCACAGTGGTGTTGAGCCCCAAAATACCAGATTC
CCAGGATAACGAAAAGAAACCGTTTTCAAAATCGGAGCCGGGAAATGCAA
CTGTGAGAGTTAATGCAGGTGGTATAGTTCTTAACAAAATACCAGCGATT
ATAAGGCCAAGTATGAAGAGAGCAGCAACAACAAAGATGACTGGAGCCAC
GGCTGCGGGAGCAACAACAACAACATCGTCAACAGGTGCAGTGGGATATC
CCGTTCTCAAAACACCCAAGTATGTGGTTCAGACTAGTCCGAGTGGATCC
TCTGGCCATCAGCTCCAGATGCTGGCGAGGAAGGACACTCAAAGTCTGGG
AGTGGCCATCAATTCACTGCCGCCCAACACAATCATCAAAGCAACCACAA
GACCTTCACAAACAGCGCCTTTGACACCAAACTCAGCGGCTGTCACGCCA
AGCACGCCGAGCAGTAGCAGGAATTCCACTCAGTCCACACCAACTGTGGT
ACCTGATGCGAGAGTTTCCTCCGCCGTGCGCCAAGCTGTGTTCATCAAGA
GGGAGCTACCCCAGCCGCAGAGGAGCATGCGAAATATGACACTTGGTTTG
GTGGAACAGGCGCCACTGCTTCATTTGGGTGTTGCGCCACAGCACCTGTC
ACTGCTGAAACGCCATATCTGCCGCAATGCTAATGTCACCCACTTGGACT
GTTGCTTGACTCTAAAGAAACTCAAACAAAACGAGCACTTCGCCCTGTTG
GCCGAGCACTTTGAGCTGAGCGAATCAGATGTCGAGGACACATTTAAGCG
CACCCTTTATCAAGCTGGCCCGTTACCTCCGTCCACTGATTCGTTGGCCA
GATGCACGGCATCACAACGAGCGCTTCAAACATACCCCCACTGAACTACC
GAGCCACCTGTTGCATGTACGCCTCGTTGAATCGAGTGTGGGGAAACGGA
CGTGCCGATAAATCTTGTGGATTGGGGCAGCCGCCAGCCTATAAATTCAT
TATTGGTGCATCAATACAAATGGCATCATCACCTATGTGTCTAGCGCCCT
TCCTGGTAGGTGCGATGATCTTCAATTGTTGGAGGC
UFO06956.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:17:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6568-RA | 1813 | CG6568-RA | 80..1197 | 9..1136 | 5210 | 98.1 | Plus |
| CG6568-RB | 1721 | CG6568-RB | 94..1105 | 115..1136 | 4680 | 97.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:17:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 17406087..17406801 | 1015..298 | 3300 | 98.9 | Minus |
| 2R | 25286936 | 2R | 17406875..17407057 | 297..115 | 915 | 100 | Minus |
| 2R | 25286936 | 2R | 17407241..17407348 | 116..9 | 540 | 100 | Minus |
| 2R | 25286936 | 2R | 17405920..17405984 | 1136..1072 | 265 | 93.8 | Minus |
Blast to na_te.dros performed 2014-11-28 23:17:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| BS | 5142 | BS BS 5142bp | 2000..2073 | 208..281 | 145 | 66.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2930..3006 | 219..292 | 144 | 67.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2377..2446 | 221..290 | 143 | 67.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1479..1587 | 183..289 | 142 | 63.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6744..6817 | 221..291 | 137 | 68.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6723..6790 | 221..285 | 134 | 70.6 | Plus |
| Dyak\TART | 8444 | Dyak\TART TARTYAK 8444bp | 6032..6094 | 225..290 | 134 | 69.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6765..6835 | 221..291 | 130 | 64.8 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1071..1141 | 221..291 | 130 | 64.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2420..2484 | 219..283 | 127 | 66.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2405..2510 | 186..291 | 125 | 57.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2332..2395 | 221..284 | 122 | 65.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2350..2419 | 221..290 | 116 | 62.9 | Plus |
| Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 4260..4290 | 414..444 | 110 | 83.9 | Plus |
UFO06956.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:19:33 Download gff for
UFO06956.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6568-RA | 78..1195 | 9..1136 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:54:44 Download gff for
UFO06956.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6568-RA | 80..1197 | 9..1136 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:56:07 Download gff for
UFO06956.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6568-RA | 80..1197 | 9..1136 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:56:07 Download gff for
UFO06956.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 17405920..17405983 | 1073..1136 | 93 | <- | Minus |
| 2R | 17406037..17406801 | 298..1072 | 97 | <- | Minus |
| 2R | 17406875..17407055 | 117..297 | 100 | <- | Minus |
| 2R | 17407241..17407348 | 9..116 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:54:44 Download gff for
UFO06956.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 13294746..13294853 | 9..116 | 100 | | Minus |
| arm_2R | 13293425..13293488 | 1073..1136 | 93 | <- | Minus |
| arm_2R | 13293542..13294306 | 298..1072 | 97 | <- | Minus |
| arm_2R | 13294380..13294560 | 117..297 | 100 | <- | Minus |
