UFO06957.5prime Sequence
1082 bp (961 high quality bases) assembled on 2009-08-31
> UFO06957.5prime
CAGTCGACATGTTGCGGCAGTGTCTGGTGGGCGTGCTGCTAGTTATAACT
GGTGCTAATGGCCAGGGAAAGGAGAAAGAGGAGTTTCAATGCCCCTCACA
CATTGCCAACGGTAACTACGCTGATCCGGCGACCTGTCGTCGTTTTTACC
AGTGCGTCGATGGATATCCGTATTTGAACCGCTGTCCATCCGGACTTTTC
TTCGATGATGTGCAGAAGTTCTGCACTTTCAAGGATGAGGCCAAGTGCGG
TCCTCTACCAACAACGCCTGCCCCTGCCACTGAGGCCCCGGCAGATACCG
CCCAGCGGTGCAACACGGAGAACTGCGCCCTGCCCTATTGCTTCTGCTCC
AAGGACGGCACCCAGATTCCCGGCGACCTGGAGCCCGAAAAAATCCCCCA
AATTATTATGCTGACCTTCGATGGCGCTGTGAATTTGAACAACTACCAGC
ACTACCAAAAGATATTCGACGGCAAGCGCAAGAATCCCAACGGCTGTCTG
ATTCGGGGCACCTTCTTCATGTCGCACGAGTACAGCAACTACCAGCAAAT
CCAGCACCTGGGATACTATGGACACGAAATCGGAACGGAGAGCATCTCGC
AGCAGCAAGGACTGCAGGATAAGGGCTACGAGGAGTGGGTGGGCGAGATG
ATTGGCATGCGTGAAATCCTGCGACACTTCGCCAATGTGTCCGTCAACGA
TGTGGTCGGCATGCGAGCTCCGTTCCTCAAACCTGGCCGCAACACCCAAT
ACAAAGGTGCTGGAGGACTTTGGGTACATCTATGACAGCTCGATCACCGT
TCCACCGGTACCCGTGCCAGTGTGGCCGTACACCCTCGATTACAGATCTC
GCACGAGTGCAGAGCGGCACCTGTCCGTCGCGCACTTTCCCCGGCGTTTG
GAGGTTCCCCTGACACCCACTACGTGGAGGGCTATGAGGCCGGTCACTGT
TCCCTATCTCGACCAGTGCGTCTTGCCCCACCAGACGAGGAGGAGGTGTT
TTTCATGGGCTACAGGAAGACTTTTCGCGCCTACTACGAACGAAACAGCT
GCATAATGGATGCCTTCCACACTAACTGGTTT
UFO06957.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:43:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cda4-RA | 1934 | CG32499-RA | 147..1222 | 9..1081 | 4890 | 97.6 | Plus |
| verm-RG | 2165 | CG8756-RG | 589..807 | 324..542 | 270 | 75.5 | Plus |
| verm-RI | 2255 | CG8756-RI | 679..897 | 324..542 | 270 | 75.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:43:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 22590664..22590885 | 754..533 | 1110 | 100 | Minus |
| X | 23542271 | X | 22588522..22588852 | 1081..755 | 935 | 92.2 | Minus |
| X | 23542271 | X | 22605246..22605388 | 535..393 | 715 | 100 | Minus |
| X | 23542271 | X | 22610802..22610929 | 392..265 | 640 | 100 | Minus |
| X | 23542271 | X | 22619624..22619739 | 264..149 | 580 | 100 | Minus |
| X | 23542271 | X | 22619823..22619915 | 152..60 | 465 | 100 | Minus |
| 3L | 28110227 | 3L | 19691391..19691609 | 542..324 | 270 | 74.9 | Minus |
| X | 23542271 | X | 22632512..22632564 | 61..9 | 265 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:43:56 has no hits.
UFO06957.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:19:32 Download gff for
UFO06957.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32499-RA | 138..1221 | 1..1082 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:37:10 Download gff for
UFO06957.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cda4-RA | 139..1222 | 1..1082 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:13:08 Download gff for
UFO06957.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cda4-RA | 139..1222 | 1..1082 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:13:08 Download gff for
UFO06957.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 22610802..22610929 | 265..392 | 100 | <- | Minus |
| X | 22619624..22619735 | 153..264 | 100 | <- | Minus |
| X | 22619823..22619914 | 61..152 | 100 | <- | Minus |
| X | 22632513..22632570 | 1..60 | 93 | | Minus |
| X | 22588521..22588850 | 757..1082 | 92 | <- | Minus |
| X | 22590663..22590882 | 536..756 | 99 | <- | Minus |
| X | 22605246..22605388 | 393..535 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:37:10 Download gff for
UFO06957.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 22021460..22021571 | 153..264 | 100 | <- | Minus |
| arm_X | 22021659..22021750 | 61..152 | 100 | <- | Minus |
| arm_X | 22034349..22034406 | 1..60 | 93 | | Minus |
| arm_X | 21992499..21992718 | 536..756 | 99 | <- | Minus |
| arm_X | 22007082..22007224 | 393..535 | 100 | <- | Minus |
| arm_X | 21990357..21990686 | 757..1082 | 92 | <- | Minus |
| arm_X | 22012638..22012765 | 265..392 | 100 | <- | Minus |
