Clone UFO06958 Report

Search the DGRC for UFO06958

Clone and Library Details

Library:UFO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2008-06-20
Comments:BD Creator expression clones with C-terminus FLAG HA tag for transgenic expression using PhiC31 integrase system
Original Plate Number:69
Well:58
Vector:pUAST-CFLAGHA-BD-PHI
Associated Gene/TranscriptnudC-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

UFO06958.5prime Sequence

1084 bp (965 high quality bases) assembled on 2009-08-31

> UFO06958.5prime
CAGTCGGACATGGCTGCTGAGGAGGGAAAGTTTGACAACATACTGCTGGC
CGTGGCCGAGAAGCATCACGGTGGCGTGCCCGAGTTCCTTGGCACTTTGG
CCAGTTTTCTGCGCCGCAAGACCGACTTCTTCACGGGAGCCAAGCAGACG
GAGTGGGAGAAGCTGCTGCTGGATGTCTTCAACAAGGAGTCCAAGCTGGC
CGTAACTGAAAACTACGAAAAGATAAAGGCTCGCGAAGCTTCCCAGCGCC
TAAAGGCGGAGAAGGAGAGAGCCGAAAGGAAGGCCCGCAAGCAGGAGATT
GACGATAATAAAATATGTGATATCACTGACGAAGAGGCAGCGGCCATTAT
CAAGGAGGAGGAGACCAAAAAACGCCAGCAGCTGCTGGATAGCGCTGGTG
GAGAGCCATCTGCCTCGAACCGAGATGGCATCTCCAAGCCCATCGAGAAA
GTGGACGATGAATCCGATAAGAGTGAGCTGGGTAAGCTGATGCCGAATGC
AGGCAATGGCTGCACCTTGGAAAACTACACCTGGACCCAAACTCTGGAGG
AGGTGGAGCTCAAGATTCCGTTCAACTTAACATTCGGTCTACGCGCCCGT
GATCTAGTGATCAGTATTGGTAAGAAGTCGCTGAAGGTGGGCATCAAAGG
TCAGACGCCCATCATCGATGGCGAACTGTGCGGCGAGGTGAAGACGGAGG
AGTCCGTGTGGGTCTTGCAAGACAGCAAAACCGTGATGATCACTCTTGAT
AAGATCAATAAGATGAACTGGTGGAGCCGCCTGGTCACAACCGATCCAGA
GATCTCGACGCGCAAGATCAATCCAGAGTCTTCCAAGCTTTCTGATCTGG
ATGGGGAGACTCGCAGTATGGTGGAGAGATGATGTATGATCAGCGACAGA
TGAGTTGGGTCTTCCCACCAGCGAGGATCGCAAAAAACAGACATACTTGA
GAATTTAGCACAGCATCTGAGATGACTTCTCAGTGTAATTCATGCAAGCT
TTCTAGAACATCGTTGGCGCGCGGCCCAGTTATTGTCTTATCTAATCTAA
TCCTAATCTATCCACTAGCTAGAGATCTGGGCTG

UFO06958.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:18:00
Subject Length Description Subject Range Query Range Score Percent Strand
nudC-RB 1622 CG9710-RB 510..1499 9..988 4680 98.8 Plus
nudC-RA 1238 CG9710-RA 126..1115 9..988 4680 98.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:17:57
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 16818905..16819304 557..953 1820 98.8 Plus
3L 28110227 3L 16808693..16808978 83..368 1430 100 Plus
3L 28110227 3L 16809168..16809357 369..558 950 100 Plus
3L 28110227 3L 16808544..16808619 9..84 380 100 Plus
Blast to na_te.dros performed on 2014-11-28 22:17:58 has no hits.

UFO06958.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:19:31 Download gff for UFO06958.5prime
Subject Subject Range Query Range Percent Splice Strand
nudC-RA 123..1112 9..988 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:02:15 Download gff for UFO06958.5prime
Subject Subject Range Query Range Percent Splice Strand
nudC-RA 126..1115 9..988 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:47:31 Download gff for UFO06958.5prime
Subject Subject Range Query Range Percent Splice Strand
nudC-RA 126..1115 9..988 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:47:31 Download gff for UFO06958.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 16809168..16809357 369..558 100 -> Plus
3L 16818907..16819308 559..958 98 -> Plus
3L 16808544..16808619 9..84 100 -> Plus
3L 16808695..16808978 85..368 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:02:15 Download gff for UFO06958.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 16801644..16801719 9..84 100 -> Plus
arm_3L 16801795..16802078 85..368 100 -> Plus
arm_3L 16802268..16802457 369..558 100 -> Plus
arm_3L 16812007..16812408 559..958 98 -> Plus