UFO06958.5prime Sequence
1084 bp (965 high quality bases) assembled on 2009-08-31
> UFO06958.5prime
CAGTCGGACATGGCTGCTGAGGAGGGAAAGTTTGACAACATACTGCTGGC
CGTGGCCGAGAAGCATCACGGTGGCGTGCCCGAGTTCCTTGGCACTTTGG
CCAGTTTTCTGCGCCGCAAGACCGACTTCTTCACGGGAGCCAAGCAGACG
GAGTGGGAGAAGCTGCTGCTGGATGTCTTCAACAAGGAGTCCAAGCTGGC
CGTAACTGAAAACTACGAAAAGATAAAGGCTCGCGAAGCTTCCCAGCGCC
TAAAGGCGGAGAAGGAGAGAGCCGAAAGGAAGGCCCGCAAGCAGGAGATT
GACGATAATAAAATATGTGATATCACTGACGAAGAGGCAGCGGCCATTAT
CAAGGAGGAGGAGACCAAAAAACGCCAGCAGCTGCTGGATAGCGCTGGTG
GAGAGCCATCTGCCTCGAACCGAGATGGCATCTCCAAGCCCATCGAGAAA
GTGGACGATGAATCCGATAAGAGTGAGCTGGGTAAGCTGATGCCGAATGC
AGGCAATGGCTGCACCTTGGAAAACTACACCTGGACCCAAACTCTGGAGG
AGGTGGAGCTCAAGATTCCGTTCAACTTAACATTCGGTCTACGCGCCCGT
GATCTAGTGATCAGTATTGGTAAGAAGTCGCTGAAGGTGGGCATCAAAGG
TCAGACGCCCATCATCGATGGCGAACTGTGCGGCGAGGTGAAGACGGAGG
AGTCCGTGTGGGTCTTGCAAGACAGCAAAACCGTGATGATCACTCTTGAT
AAGATCAATAAGATGAACTGGTGGAGCCGCCTGGTCACAACCGATCCAGA
GATCTCGACGCGCAAGATCAATCCAGAGTCTTCCAAGCTTTCTGATCTGG
ATGGGGAGACTCGCAGTATGGTGGAGAGATGATGTATGATCAGCGACAGA
TGAGTTGGGTCTTCCCACCAGCGAGGATCGCAAAAAACAGACATACTTGA
GAATTTAGCACAGCATCTGAGATGACTTCTCAGTGTAATTCATGCAAGCT
TTCTAGAACATCGTTGGCGCGCGGCCCAGTTATTGTCTTATCTAATCTAA
TCCTAATCTATCCACTAGCTAGAGATCTGGGCTG
UFO06958.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:18:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
nudC-RB | 1622 | CG9710-RB | 510..1499 | 9..988 | 4680 | 98.8 | Plus |
nudC-RA | 1238 | CG9710-RA | 126..1115 | 9..988 | 4680 | 98.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:17:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 16818905..16819304 | 557..953 | 1820 | 98.8 | Plus |
3L | 28110227 | 3L | 16808693..16808978 | 83..368 | 1430 | 100 | Plus |
3L | 28110227 | 3L | 16809168..16809357 | 369..558 | 950 | 100 | Plus |
3L | 28110227 | 3L | 16808544..16808619 | 9..84 | 380 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:17:58 has no hits.
UFO06958.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:19:31 Download gff for
UFO06958.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
nudC-RA | 123..1112 | 9..988 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:02:15 Download gff for
UFO06958.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
nudC-RA | 126..1115 | 9..988 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:47:31 Download gff for
UFO06958.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
nudC-RA | 126..1115 | 9..988 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:47:31 Download gff for
UFO06958.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 16809168..16809357 | 369..558 | 100 | -> | Plus |
3L | 16818907..16819308 | 559..958 | 98 | -> | Plus |
3L | 16808544..16808619 | 9..84 | 100 | -> | Plus |
3L | 16808695..16808978 | 85..368 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:02:15 Download gff for
UFO06958.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 16801644..16801719 | 9..84 | 100 | -> | Plus |
arm_3L | 16801795..16802078 | 85..368 | 100 | -> | Plus |
arm_3L | 16802268..16802457 | 369..558 | 100 | -> | Plus |
arm_3L | 16812007..16812408 | 559..958 | 98 | -> | Plus |