UFO06959.5prime Sequence
1103 bp (982 high quality bases) assembled on 2009-08-31
> UFO06959.5prime
CAGTCGACATGCAGCAGCTGATCAGAGTGGCGCGGACGTTGGGTCAACGC
TCGAGCGGCGCATGGAGTGCGAGGATAATCGCTGGTGGAAACCGGGGAAT
CGCATGCCTGGCCGCCCTCTCCGAGACCCATCAGATTCTCCAGAAGACTT
GCCGGGAGTTCGCCAATGCGGAACTGGCCCCCAAAGCGCGACACCACGAC
CGGGAGGAGCTTTATCCGGCGGAACAGGTCCGACGGTTGGGAGAACTCGG
TCTCATGTCAGTGACGGTTCGAGAGGAGTATGGTGGTTCCGGATTGGATT
ACCAGGCCTACGCGATTGGCATGGAGGAGGTGGCTCGTGGTGACGCCGCC
GTGTCCATTGTGATGGGCGTGAATAACCTGTACCTGGGTGCAGTGCAGCA
GCATGGAACCGAGCAGCAGAAGCAGGATTTCCTGGTGCCGTACACCCAGG
GTGAGCACATCGCCTTCTATGCACTATCGGAACCTGGAAACGGATCGGAT
GCAGGAGCTGCCAGCACCACGGCCAAGCTGCAAGGGGACAGCTACCAAAT
AAACGGCACTAAAGCGTGGATATCAAACTCCAAGGAGGCCAGCGGGGGTA
TCGTCTTTGCCACGGTGGACAAGAGCATGAAACACAAGGGAATCACTGCC
TTTCTTACGCCCAAGGATGTTCCAGGACTCTCCATAGCCAAGAAGGAAAG
CAAAATGGGCATGCGCGCGACTTCGACTTGCCAGCTGGTGCTGGAGGACG
TTCACGTGCCGCGATCCCGGGTCCTTGGAGCTGCCGGTGATGGCTTCAAG
ATCGCCATGCAGTCCTTGGACTGTGGCAGGATCGGTATAGCCGCCCAGGC
CACCGGTATCGCACAAGCTGCCCTGGAACTAGCCGTGGATTATTCGCAGA
AGAGGGTGGGCCTTCGGAAAGCATCTGGCACGGTGCAGCTCATCCAGCAG
AAGCTGGCCGACATGGCCACGCGGGTGGAGATCCTCAAGCTGCTAACGTG
GGCGTGCCCCTTGGCTGAAGAATATGGGCTGCATCACAAAGGAGCGGCCA
TGGCAAGCTGCATGCTCGATCCGCCACTTTGGTCCCATGCATCGATCTGG
GTG
UFO06959.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:28:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4860-RA | 1393 | CG4860-RA | 15..1075 | 9..1065 | 5035 | 98.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:27:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 12220199..12220986 | 1065..282 | 3495 | 98.2 | Minus |
| 3R | 32079331 | 3R | 12221113..12221356 | 285..42 | 1205 | 99.6 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:27:58 has no hits.
UFO06959.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:19:30 Download gff for
UFO06959.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4860-RA | 7..1096 | 1..1083 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:20:33 Download gff for
UFO06959.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4860-RA | 8..1097 | 1..1083 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:58:43 Download gff for
UFO06959.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4860-RA | 8..1097 | 1..1083 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:58:43 Download gff for
UFO06959.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 12220177..12220985 | 283..1083 | 97 | <- | Minus |
| 3R | 12221116..12221355 | 43..282 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:20:33 Download gff for
UFO06959.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 8045899..8046707 | 283..1083 | 97 | <- | Minus |
| arm_3R | 8046838..8047077 | 43..282 | 99 | <- | Minus |
