UFO06961.5prime Sequence
1124 bp (1003 high quality bases) assembled on 2009-08-31
> UFO06961.5prime
CAGTCGACATGGTCTCGCCATTGATAATTCTTTTAATTATTTGGCTCTCC
GTGGGCGCAAAGTCAGTGGAGATCGCCAGTATAAACCATCCCTGTGCCTA
CGCCCACACGGTCAACATTACGGATGGACTGCGGATGAAGGATGGCTCCT
ACTCATACGCTGGAGTAGTGGTCCCACCGCATCTGATGGCGGAGTACTCC
TTCAAGGTGATCGATGGAGTGGAGTACCGGGCCAAGAAACATCTGCGCGG
CTGCGTCTGTCTGCTGAAGCCCTGCATCAGTTTCTGTTGTCCGGAGAACC
TCGTCTTTGATGCCAAGCACTGGAACTGCACAATGCCACACCAAGTCCGC
GAGTCCACTCACGTGGAGCTCACCTACGCTAACAGGACTGTGGATCAAGT
ACGCATACGCGATCGTTTTGTGGTGCGCACAGAGCTGGGTTGCCGGAACA
AATTCGTGGACAAAAAGCACGATAACTTCTGGCAATGGGACCTCTTCGAG
AATGGAACTCTGCGGCGGGACAATCGTCTGTGGTCAACGGATGAGTATTG
CTTTAGCCCGTTGGAGCACAATCCGGAGCAGTGGGAGCTCACTCCGCTCA
ACTGCGAACGCTTTCAAACGGGGTACCGGGTTTGGATTTACGCCATTTGC
AGTATTATAGCCATCATTATAAACATTTTCATACTCTCCCTACTTGGATC
TGTGAGAGATGCCCGTAAAAGCCACTATGGCCAGTTAATCATCTACTACT
TGCTGTCCATGATCGTTGGTTACTCCCTGTTGGTCTACTTGGCCTTGAAG
AATCCCATGAAGCTCTCGCATGTGGCTTGCAGAAACATAGGATTTCTGGC
CTACTTCTGCATCATGCTCTCTTTCGTCTTTCTGGCCATTTGCAGTCTTG
ACTTTCTGCTCAAATTTAAACAAAAGCTGTCAGAGCTCGGTCCGTCGATT
GTCCCTTGCTCTGGCAGTCCTGGCGGTGATTGGTCTTTCGGTTTGGTCCT
CTTAGCCAGGACTCCAGCTGCCCAGCACTTCAGCCAGGCATGGGAGAAAG
AATTACTGGCTGGATCGATGTCGCACTGGGGGTATTTTGATCTACTACTA
CGAACATGCACTCCCTCTGAATTT
UFO06961.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:43:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mthl9-RA | 2133 | CG17084-RA | 373..1472 | 8..1102 | 5085 | 98.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:43:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 331296..331937 | 649..8 | 3210 | 100 | Minus |
| 3L | 28110227 | 3L | 331048..331240 | 841..649 | 965 | 100 | Minus |
| 3L | 28110227 | 3L | 330775..330991 | 1048..839 | 615 | 93.1 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:43:09 has no hits.
UFO06961.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:19:27 Download gff for
UFO06961.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mthl9-RA | 362..1484 | 1..1114 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:36:54 Download gff for
UFO06961.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mthl9-RA | 365..1487 | 1..1114 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:12:41 Download gff for
UFO06961.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mthl9-RA | 365..1487 | 1..1114 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:12:41 Download gff for
UFO06961.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 330756..330989 | 841..1070 | 92 | <- | Minus |
| 3L | 331049..331240 | 649..840 | 100 | <- | Minus |
| 3L | 331297..331945 | 1..648 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:36:54 Download gff for
UFO06961.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 330756..330989 | 841..1070 | 92 | <- | Minus |
| arm_3L | 331049..331240 | 649..840 | 100 | <- | Minus |
| arm_3L | 331297..331945 | 1..648 | 99 | | Minus |
