UFO06962.5prime Sequence
1097 bp (1009 high quality bases) assembled on 2009-08-31
> UFO06962.5prime
CAGTCGACATGCGCCTGCTGATATTGCTACTGCTGCCACTGGTGGCCATC
GCCCAAGATGACTACTGCTTCAGCAAGGACACCTCCCGCCTCCAGACCCG
CCAGTTCTCCTCGAAGACCGCCTATCAGATCGTCAAGGGCACGGACATTG
ACAAGCAGTACCTGGTGCCCGGCTGTCAGCCCCAGAAGATGTGGATCTTT
CACAGGCACGGCACACGACTGCCCAAGAAGAGCATGATCAACAAGGCGTC
CAGGGTGGCTGAGCTGCGCGATCTCATCATTAACAACTACCAAGTGGCCA
GGACCAAGCCCGAAACGGATGCTCTCTGCCAGACGGATCTGATTGCCATC
AAGTTGTGGAAGTGGAACAGCAGCATAACGCCCGACATGGAGGAGTATCT
GACCGCCCAGGGCTACGAGGATCTCAGGGGCACGGCCAAGCTGTACCAGC
GGTACTATCCCACTGTGCTGACCGCTAACTATAATGACACTTACTACCAG
TTCCGCCATACGGACACCCAGCGCACCACGGAAAGTTTCAAGGCTTTCGC
CGAGGGTCTGTTTGGATCCCAAAACGCTGCTCATCCCGTCGAGATTCCCA
AGCAGGATCTGCTGCTGCGTCCCTATGACTATTGCTCCTCTTTCAAGAAT
GTGAACTACAAGGATGAGGGCTCTGAGTACTACAAGTTTCATCAGTCGAA
GCTGTACAACGACACGTTGGCGGATATCTCCACTCGATTGGGTTTCCTTT
ACACCCTGGAGGAGGCGGACATCAAGCTAATGTACGATATGTGTCGCTAT
GAGCAGGCGTGGAATGTGGACCGCAATAGCGTCTGGTGCGGCGCCTTCTT
GCCGGAGCAATAACGGTCTTTGAGTACCTGGAAGATCTAAAGTACTACTA
TGGCTCGGGCTATGGTTTCCCGGAAAACGCACATCTCAACTGCCGACTGG
TGCAGACCTGCTCACCCACCTGAGCATCCGGTGTCGCGCATGGGGTAGCT
CATTTCGGTCACTCGACTGGTCTCTACTCTTCTACTGCGCTGGGATTCAG
AAGGACGACTCAAGGTGCGGGGCAGACATTACGAAGGTTGACAGCCC
UFO06962.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:54:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Mipp1-RC | 2009 | CG4123-RC | 133..1226 | 9..1092 | 5100 | 98.4 | Plus |
| Mipp1-RA | 1828 | CG4123-RA | 133..1226 | 9..1092 | 5100 | 98.4 | Plus |
| Mipp1-RB | 1769 | CG4123-RB | 74..1167 | 9..1092 | 5100 | 98.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:54:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 16565609..16565863 | 263..9 | 1275 | 100 | Minus |
| 3L | 28110227 | 3L | 16564719..16564962 | 742..499 | 1220 | 100 | Minus |
| 3L | 28110227 | 3L | 16565033..16565271 | 500..262 | 1195 | 100 | Minus |
| 3L | 28110227 | 3L | 16564305..16564517 | 1024..816 | 850 | 97.7 | Minus |
| 3L | 28110227 | 3L | 16564573..16564649 | 818..742 | 385 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:54:54 has no hits.
UFO06962.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:19:26 Download gff for
UFO06962.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mipp1-RA | 129..1227 | 9..1096 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:26:07 Download gff for
UFO06962.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mipp1-RB | 67..1172 | 1..1096 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:41:17 Download gff for
UFO06962.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mipp1-RB | 67..1172 | 1..1096 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:41:17 Download gff for
UFO06962.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 16565609..16565870 | 1..263 | 98 | | Minus |
| 3L | 16564719..16564960 | 501..742 | 100 | <- | Minus |
| 3L | 16565033..16565269 | 264..500 | 100 | <- | Minus |
| 3L | 16564226..16564517 | 816..1096 | 93 | <- | Minus |
| 3L | 16564576..16564648 | 743..815 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:26:07 Download gff for
UFO06962.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 16557326..16557617 | 816..1096 | 93 | <- | Minus |
| arm_3L | 16557676..16557748 | 743..815 | 100 | <- | Minus |
| arm_3L | 16557819..16558060 | 501..742 | 100 | <- | Minus |
| arm_3L | 16558133..16558369 | 264..500 | 100 | <- | Minus |
| arm_3L | 16558709..16558970 | 1..263 | 98 | | Minus |
