UFO06963.5prime Sequence
1104 bp (982 high quality bases) assembled on 2009-08-31
> UFO06963.5prime
CAGTCGACATGATCCTCGAGAGAAACCGGAGGTGCCAGCTGGCCCTCCTC
ATGATCGCAATACTGGCCGCCATCGCTGGACAAACGGATGCCCAGAAGGC
GGCCAAACTGACGGCAGTGAGCACATGTGCATCGAAGGAAAAGTGTCACA
CCTGCATCCAGACAGAGGGTTGCGCCTGGTGCATGCAGCCGGACTTTAAG
GGCCAGTCGCGGTGCTACCAAAACACCAGCTCACTGTGTCCGGAGGAGTT
CGCCTACAGTCCGATAACAGTTGAGCAGATTCTAGTGAACAACAAACTAA
CGAATCAATACAAAGCTGAACTGGCGGCTGGTGGCGGCGGCTCCGCCATG
TCCGGCAGCAGCTCAAGCTCCTACTCGTCGAGTTCGAGCTCGTCGAGCTT
CTACTCGCAGAGCTCCTCGGGATCCAGTTCCGCCAGCGGATACGAAGAGT
ACTCTGCCGGCGAAATTGTCCAAATCCAACCGCAGTCCATGCGACTCGCA
TTGCGCGTCAATGAGAAACACAACATCAAGATTAGCTATTCCCAGGCGGA
GGGATATCCGGTGGATCTCTACTACTTGATGGATCTCTCCAAATCTATGG
AGGACGACAAGGCCAAATTGTCTACGCTGGGCGACAAGTTGTCCGAGACC
ATGAAACGCATCACCAACAATTTCCATCTTGGTTTCGGTTCGTTTGTGGA
CAAGGTGCTCATGCCCTATGTCTCGACCATTCCCAAAAAACTCGAGCATC
CATGCGAAAACTGCAAGGCTCCCTATGGTTACCAAAATCACATGCCACTC
AACAATAACACCGAAAGCTTCTCTAACGAGGTGAAGAATGCCACAGTGTC
AGCAACTTGGATGCTCCCGAAGAGTTTCGATGCCATCATGCAGCCATTGC
CTGCCGATCGCAGATCGGTGGCGGGAACAGGCTCGTCGCTGTGGTCTTTC
TCGACGACGCAGCTTCCATTATGCTGCGATGCAATTGGGCGGGGTGATTG
CTCCAACGAATGGCGAGTGTTCACTGAGTCCCAAGGGCGAGTACACGCAT
TCAAGCTGCAGATTATCCCAGATTCGCGAATCACGAGTCAGACATGCATC
TAAA
UFO06963.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:17:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mys-RD | 4397 | CG1560-RD | 554..1630 | 8..1071 | 4880 | 98 | Plus |
| mys-RC | 4187 | CG1560-RC | 344..1420 | 8..1071 | 4880 | 98 | Plus |
| mys-RA | 4042 | CG1560-RA | 199..1275 | 8..1071 | 4880 | 98 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:16:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 8063957..8064464 | 8..515 | 2525 | 99.8 | Plus |
| X | 23542271 | X | 8064533..8064761 | 511..739 | 1145 | 100 | Plus |
| X | 23542271 | X | 8067062..8067300 | 825..1052 | 490 | 89.1 | Plus |
| X | 23542271 | X | 8065448..8065532 | 740..824 | 425 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 23:16:59 has no hits.
UFO06963.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:19:25 Download gff for
UFO06963.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mys-RA | 191..1281 | 1..1077 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:54:34 Download gff for
UFO06963.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mys-RA | 193..1283 | 1..1077 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:55:56 Download gff for
UFO06963.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mys-RA | 193..1283 | 1..1077 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:55:56 Download gff for
UFO06963.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 8063951..8064459 | 1..510 | 99 | -> | Plus |
| X | 8064533..8064761 | 511..739 | 100 | -> | Plus |
| X | 8065448..8065532 | 740..824 | 100 | -> | Plus |
| X | 8067062..8067329 | 825..1077 | 91 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:54:34 Download gff for
UFO06963.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 7957984..7958492 | 1..510 | 99 | -> | Plus |
| arm_X | 7958566..7958794 | 511..739 | 100 | -> | Plus |
| arm_X | 7959481..7959565 | 740..824 | 100 | -> | Plus |
| arm_X | 7961095..7961362 | 825..1077 | 91 | | Plus |
